Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

4 accessions found for Deinococcus deserti VCD115  

Data for CP001115  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001115.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001115_0105 CDS_145381-144011 66.3 1.2e-19 1
CP001115_0031 CDS_44769-49019 53.0 7.4e-16 1
CP001115_0027 CDS_41249-38451 50.4 3.8e-15 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001115_0105 1/1 233 297 .. 1 87 [] 66.3 1.2e-19
CP001115_0031 1/1 1195 1263 .. 1 87 [] 53.0 7.4e-16
CP001115_0027 2/2 703 771 .. 1 87 [] 49.4 7.5e-15

Alignments of top-scoring domains:
CP001115_0105: domain 1 of 1, from 233 to 297: score 66.3, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++H+L+TPL++I+g++e++l++ + + ++e
CP001115_0 233 ARRQLTADIAHDLNTPLAVISGTLEAILDGTF-------KPTSER-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++++e+++ ++L+ndl+ ls ++ag
CP001115_0 271 -------------LKRLHQETQHVSQLVNDLRFLSLADAG 297

CP001115_0031: domain 1 of 1, from 1195 to 1263: score 53.0, E = 7.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a +sH+L+ PL +Ir y+el++++l + l+e
CP001115_0 1195 DLEHFAAVASHDLKSPLRTIRSYLELIERRLT------GQLDERS-- 1233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + ++a r++ Li+dlL ++r + +
CP001115_0 1234 ----------MRYMGFATEAAARMDTLIDDLLAYARVGRQ 1263

CP001115_0027: domain 2 of 2, from 703 to 771: score 49.4, E = 7.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL ++ y+elL +++ + + +e++
CP001115_0 703 DLEQFAYVASHDLQEPLRTVTSYTELLARRY-------GGQLDEKA- 741

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +a+r+ +L++dlLd+sr +a+
CP001115_0 742 ----------EKYMTFTVAAARRMGQLVQDLLDFSRVRAE 771


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 6 0|======
-12 19 5|====*==============
-11 41 31|==============================*==========
-10 49 57|================================================= *
-9 36 59|==================================== *
-8 40 44|======================================== *
-7 26 28|========================== *
-6 12 16|============ *
-5 10 8|=======*==
-4 12 4|===*========
-3 3 2|=*=
-2 3 1|*==
> -1 4 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 43.8572
P(chi-square) = 2.278e-07

Total sequences searched: 262

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: