Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

4 accessions found for Deinococcus deserti VCD115  

Data for CP001116  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001116.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001116_0117 CDS_144948-149882 90.6 1.5e-26 1
CP001116_0067 CDS_79469-78015 81.2 7e-24 1
CP001116_0122 CDS_157009-155909 56.7 5.9e-17 1
CP001116_0119 CDS_150717-152420 53.9 3.9e-16 1
CP001116_0126 CDS_159953-161224 53.7 4.2e-16 1
CP001116_0233 CDS_288440-290947 48.3 1.5e-14 1
CP001116_0070 CDS_81720-83954 47.9 1.9e-14 1
CP001116_0053 CDS_62107-60215 29.5 3.2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001116_0117 1/1 946 1014 .. 1 87 [] 90.6 1.5e-26
CP001116_0067 1/1 258 325 .. 1 87 [] 81.2 7e-24
CP001116_0122 1/1 141 204 .. 1 87 [] 56.7 5.9e-17
CP001116_0119 1/1 321 389 .. 1 87 [] 53.9 3.9e-16
CP001116_0126 1/1 199 267 .. 1 87 [] 53.7 4.2e-16
CP001116_0233 1/1 615 683 .. 1 87 [] 48.3 1.5e-14
CP001116_0070 1/1 511 579 .. 1 87 [] 47.9 1.9e-14
CP001116_0053 1/1 411 479 .. 1 87 [] 29.5 3.2e-09

Alignments of top-scoring domains:
CP001116_0117: domain 1 of 1, from 946 to 1014: score 90.6, E = 1.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++++a+ L++ d++l+++q
CP001116_0 946 YKSEFLANMSHELRTPLNSLLLLAHQLRD------NPDGNLTDQQ-- 984

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +ti+ +++ ll+Lind+Ldls+ie+g
CP001116_0 985 ----------QAYAKTIYAAGNDLLSLINDILDLSKIESG 1014

CP001116_0067: domain 1 of 1, from 258 to 325: score 81.2, E = 7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELR PLt++rg++elL++ ++l++ +r
CP001116_0 258 SQQRFVGDASHELRAPLTVMRGNLELLRR--------HPHLDPAER- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l i+re+ rl+rL++dlL l+r +ag
CP001116_0 296 ----------EEMLGDIERETSRLSRLVEDLLLLARSDAG 325

CP001116_0122: domain 1 of 1, from 141 to 204: score 56.7, E = 5.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ n++HELR PLta+rgya+++ + +++e++
CP001116_0 141 GRTELIGNVAHELRAPLTALRGYADAMDD---------RVMPPEHA- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i re+ ++rL++dl sr eag
CP001116_0 178 -------------ARAISREVAAMERLVRDLSLVSRVEAG 204

CP001116_0119: domain 1 of 1, from 321 to 389: score 53.9, E = 3.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + ++sH+LRTPL I +a+lL +++ + l++
CP001116_0 321 ELEAYAYSISHDLRTPLRHIASFADLLSRNA------LEQLPPSS-- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ i++ a+r+++Li+ lLd++r +
CP001116_0 360 ----------ARYLQLIQDGARRMEHLIDGLLDFARTGRH 389

CP001116_0126: domain 1 of 1, from 199 to 267: score 53.7, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LR PL I g++ lL++ ld ++l+e+
CP001116_0 199 ELDAFAMSVSHDLRAPLRHITGFLGLLRRSLD------APLNEKS-- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++++a r++ Li+ +Ldlsr +
CP001116_0 238 ----------ERYLNLVDEAATRMNTLIDAMLDLSRTSRQ 267

CP001116_0233: domain 1 of 1, from 615 to 683: score 48.3, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L P+ a+ +a lL+ ++ + + ++
CP001116_0 615 ELEQFAYIASHDLQAPIRAVTSFAGLLESRY-------GSQLDQRG- 653

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ i ++ ++ rL++dlL +sri +
CP001116_0 654 ----------QKYLSQIVTSGLHMKRLVDDLLAFSRIHTT 683

CP001116_0070: domain 1 of 1, from 511 to 579: score 47.9, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LRTP+ r ++el+ + l ++ + +++
CP001116_0 511 ELEAFSYSVSHDLRTPVRHARSFSELAVRAL-------QAGNVDKT- 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ i ++++r+ Li+ +Ldlsr +
CP001116_0 550 ----------GQYLDMIVQATDRMTVLIDAMLDLSRTSRQ 579

CP001116_0053: domain 1 of 1, from 411 to 479: score 29.5, E = 3.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR P+ + ++ l+++ a +t ++++
CP001116_0 411 ELDAFSYSVSHDLRAPVRHMFSFLGLARR------ALSTGANDKA-- 449

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++t++++a r++ +i+ lL+lsr +
CP001116_0 450 ----------AGYVSTAENAATRMNTMIDALLTLSRTSMQ 479


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 1 0|=
-12 6 5|====*=
-11 17 29|================= *
-10 32 54|================================ *
-9 57 56|=======================================================*=
-8 37 42|===================================== *
-7 42 26|=========================*================
-6 23 15|==============*========
-5 12 8|=======*====
-4 8 4|===*====
-3 3 2|=*=
-2 2 1|*=
-1 0 0|
0 0 0|
> 1 10 -|==========


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 29.5684
P(chi-square) = 0.0001139

Total sequences searched: 250

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: