Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

4 accessions found for Deinococcus deserti VCD115  

Data for CP001117  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001117.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001117_0310 CDS_350114-347415 65.3 3.1e-19 1
CP001117_0293 CDS_327257-329797 52.0 1.8e-15 1
CP001117_0276 CDS_305864-303030 51.9 1.9e-15 1
CP001117_0074 CDS_85385-88003 45.4 1.4e-13 1
CP001117_0061 CDS_72652-71153 38.0 1.7e-11 1
CP001117_0297 CDS_334435-336741 27.9 1.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001117_0310 1/1 672 740 .. 1 87 [] 65.3 3.1e-19
CP001117_0293 1/1 626 694 .. 1 87 [] 52.0 1.8e-15
CP001117_0276 1/1 718 786 .. 1 87 [] 51.9 1.9e-15
CP001117_0074 1/1 648 716 .. 1 87 [] 45.4 1.4e-13
CP001117_0061 1/1 278 346 .. 1 87 [] 38.0 1.7e-11
CP001117_0297 1/1 540 608 .. 1 87 [] 27.9 1.2e-08

Alignments of top-scoring domains:
CP001117_0310: domain 1 of 1, from 672 to 740: score 65.3, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LRTP+ I g+++lL++ ld t+l+++
CP001117_0 672 ELESFAYSVSHDLRTPVRHIAGFTSLLRKALD------TPLDPKV-- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl +i+++a+r+++Li+ +Ldlsr +
CP001117_0 711 ----------ARYLTVIEQSAQRMNNLIDAMLDLSRSARQ 740

CP001117_0293: domain 1 of 1, from 626 to 694: score 52.0, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LRTP+ I g+a lL++ + ++ ++++
CP001117_0 626 ELEAFAYSVSHDLRTPVRHIVGFATLLRK-------HLGTGLDDKA- 664

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl +i++ a r++ Li+ +Ldlsr
CP001117_0 665 ----------NRYLTVIDEGAGRMNTLIDAMLDLSRTSRL 694

CP001117_0276: domain 1 of 1, from 718 to 786: score 51.9, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a +sH+L+ PL +I ++lL++++ + + +e++
CP001117_0 718 ELTRFAAVASHDLKAPLRTIGSQLQLLQRRY-------GGQLDEKA- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++a+r+++Li+dlL +++++++
CP001117_0 757 ----------DRMISFTVEAANRMDALIDDLLAYAQLGQQ 786

CP001117_0074: domain 1 of 1, from 648 to 716: score 45.4, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL ++ +++lL +++ + +++
CP001117_0 648 ELEQFAYVASHDLQEPLRTVTSFSQLLAKKY-------AGQTDARG- 686

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i + ++r+ +L++dlL +sr g
CP001117_0 687 ----------QMYVRLITEGTQRMTQLLQDLLAFSRVAKG 716

CP001117_0061: domain 1 of 1, from 278 to 346: score 38.0, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ + sH+LRTPL a ++ e +l++++ ++l+ee
CP001117_0 278 VVRDLIYAFSHDLRTPLMANALHMEQALKGAF------GPLPEEY-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ l++ ++ll+L ++lL+ +r e g
CP001117_0 317 ----------RRTLHNGLEANDSLLSLADQLLTVARYEGG 346

CP001117_0297: domain 1 of 1, from 540 to 608: score 27.9, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ +sH+L PL + +y+++Ll ++ + l+e
CP001117_0 540 ELAQFAYVASHDLQEPLRILGTYSDILLHRYQ------GQLDERA-- 578

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ i +++ r ++L++d+L+ls a+
CP001117_0 579 ----------QGYLRHIGEQVFRARQLVRDVLTLSNVTAQ 608


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 2 0|=
-12 11 7|===*==
-11 40 41|====================*
-10 58 76|============================= *
-9 72 79|==================================== *
-8 64 59|=============================*==
-7 49 37|==================*======
-6 17 21|========= *
-5 11 11|=====*
-4 8 6|==*=
-3 2 3|=*
-2 2 1|*
-1 3 0|==
0 1 0|=
> 1 8 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 11.8228
P(chi-square) = 0.1593

Total sequences searched: 348

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: