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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  

Data for CP001127  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001127.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001127_2901 CDS_3010794-3013550 100.2 5.4e-28 1
CP001127_0420 CDS_464400-465695 90.2 3.7e-25 1
CP001127_1398 CDS_1443565-1440803 82.3 6.1e-23 1
CP001127_2334 CDS_2379371-2376525 80.6 1.9e-22 1
CP001127_3269 CDS_3391961-3389625 78.9 5.6e-22 1
CP001127_3761 CDS_3908290-3910977 72.8 2.9e-20 1
CP001127_3973 CDS_4146798-4145425 67.0 1.3e-18 1
CP001127_2212 CDS_2244681-2246084 63.5 1.3e-17 1
CP001127_4065 CDS_4254438-4255835 62.5 2.5e-17 1
CP001127_0802 CDS_835497-832780 61.1 6.4e-17 1
CP001127_3917 CDS_4093661-4092612 60.3 1.1e-16 1
CP001127_4491 CDS_4696564-4697988 59.4 1.9e-16 1
CP001127_1084 CDS_1142315-1140951 57.5 6.6e-16 1
CP001127_3123 CDS_3247690-3249039 55.9 1.9e-15 1
CP001127_3434 CDS_3556611-3555268 54.9 3.6e-15 1
CP001127_4217 CDS_4424306-4423227 47.7 4e-13 1
CP001127_1476 CDS_1515158-1513857 47.4 4.7e-13 1
CP001127_2729 CDS_2840901-2839486 36.6 5.5e-10 1
CP001127_2456 CDS_2513210-2511204 35.3 1.3e-09 1
CP001127_1392 CDS_1435347-1437095 31.5 1.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001127_2901 1/1 292 357 .. 1 87 [] 100.2 5.4e-28
CP001127_0420 1/1 203 269 .. 1 87 [] 90.2 3.7e-25
CP001127_1398 1/1 395 460 .. 1 87 [] 82.3 6.1e-23
CP001127_2334 1/1 469 534 .. 1 87 [] 80.6 1.9e-22
CP001127_3269 1/1 282 347 .. 1 87 [] 78.9 5.6e-22
CP001127_3761 1/1 428 493 .. 1 87 [] 72.8 2.9e-20
CP001127_3973 1/1 238 300 .. 1 87 [] 67.0 1.3e-18
CP001127_2212 1/1 240 304 .. 1 87 [] 63.5 1.3e-17
CP001127_4065 1/1 246 312 .. 1 87 [] 62.5 2.5e-17
CP001127_0802 1/1 663 730 .. 1 87 [] 61.1 6.4e-17
CP001127_3917 1/1 129 186 .. 1 79 [. 60.3 1.1e-16
CP001127_4491 1/1 255 320 .. 1 87 [] 59.4 1.9e-16
CP001127_1084 1/1 236 302 .. 1 87 [] 57.5 6.6e-16
CP001127_3123 1/1 236 302 .. 1 87 [] 55.9 1.9e-15
CP001127_3434 1/1 230 290 .. 1 87 [] 54.9 3.6e-15
CP001127_4217 1/1 145 205 .. 1 87 [] 47.7 4e-13
CP001127_1476 1/1 211 271 .. 1 87 [] 47.4 4.7e-13
CP001127_2729 1/1 246 311 .. 1 87 [] 36.6 5.5e-10
CP001127_2456 1/1 447 515 .. 1 87 [] 35.3 1.3e-09
CP001127_1392 1/1 347 416 .. 1 87 [] 31.5 1.5e-08

Alignments of top-scoring domains:
CP001127_2901: domain 1 of 1, from 292 to 357: score 100.2, E = 5.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CP001127_2 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP001127_2 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP001127_0420: domain 1 of 1, from 203 to 269: score 90.2, E = 3.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
CP001127_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QALEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
CP001127_0 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 269

CP001127_1398: domain 1 of 1, from 395 to 460: score 82.3, E = 6.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ eq
CP001127_1 395 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+++++ +ll++in+lLd+srie+g
CP001127_1 431 ----------QGLADTARNCTLSLLAIINNLLDFSRIESG 460

CP001127_2334: domain 1 of 1, from 469 to 534: score 80.6, E = 1.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP001127_2 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP001127_2 505 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP001127_3269: domain 1 of 1, from 282 to 347: score 78.9, E = 5.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP001127_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP001127_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

CP001127_3761: domain 1 of 1, from 428 to 493: score 72.8, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+++lL + +l +
CP001127_3 428 AKSTFLAAMSHEIRTPLYGILGTVQLLAD---------KPLMANY-- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll+++nd+Ld+s ie g
CP001127_3 464 ----------RDDLQAINDSGESLLAILNDILDYSAIEVG 493

CP001127_3973: domain 1 of 1, from 238 to 300: score 67.0, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CP001127_3 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RGGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP001127_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP001127_2212: domain 1 of 1, from 240 to 304: score 63.5, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
CP001127_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP001127_2 278 -------------VTSLQAEVGTLTKLVDDLHQLSLSDEG 304

CP001127_4065: domain 1 of 1, from 246 to 312: score 62.5, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
CP001127_4 246 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
CP001127_4 283 ----------HELAQVMAKEADRLNRVVSELLELVKPAHL 312

CP001127_0802: domain 1 of 1, from 663 to 730: score 61.1, E = 6.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
CP001127_0 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP001127_0 701 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 730

CP001127_3917: domain 1 of 1, from 129 to 186: score 60.3, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001127_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP001127_3 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CP001127_4491: domain 1 of 1, from 255 to 320: score 59.4, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ e
CP001127_4 255 DIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPAEVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r+++L++ lL +r+e+
CP001127_4 291 ----------TRFTENILAQNMRMQALVETLLRQARLENR 320

CP001127_1084: domain 1 of 1, from 236 to 302: score 57.5, E = 6.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s+e+
CP001127_1 236 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSAEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r+e++
CP001127_1 272 ---------YQQALVDNIEELEGLSRLTENILFLARAEHQ 302

CP001127_3123: domain 1 of 1, from 236 to 302: score 55.9, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
CP001127_3 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
CP001127_3 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

CP001127_3434: domain 1 of 1, from 230 to 290: score 54.9, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
CP001127_3 230 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP001127_3 261 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 290

CP001127_4217: domain 1 of 1, from 145 to 205: score 47.7, E = 4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CP001127_4 145 NERLFTADVAHELRTPLSGVRLHLELLSK---------TH------- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
CP001127_4 176 ----------NVDVAPLIARLDQMMDSVSQLLQLARVGQS 205

CP001127_1476: domain 1 of 1, from 211 to 271: score 47.4, E = 4.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
CP001127_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP001127_1 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

CP001127_2729: domain 1 of 1, from 246 to 311: score 36.6, E = 5.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
CP001127_2 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQHPHH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + +++ +L ++lL+ls +
CP001127_2 281 ---------WYESLQAMSVTLDSTIQLTERLLQLSAVKHK 311

CP001127_2456: domain 1 of 1, from 447 to 515: score 35.3, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ ++ + a+++ +s +
CP001127_2 447 VVGQTMTTLAHEINQPLNALSMYLFTAGR------AIEQGQSGQA-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ ++r++++i+ l++++r +
CP001127_2 486 ----------RNTLTKAEGLINRIDAIIRSLRQFTRRAEL 515

CP001127_1392: domain 1 of 1, from 347 to 416: score 31.5, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aIr ya+ +l +l +++e++ l
CP001127_1 347 VLGEMTSGFAHELNQPLSAIRHYAQGCLIRL-------RAADEQHPL 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+++a+r + +++l+ +g
CP001127_1 387 ----------LPALEQIDQQAQRGADTLRNLRHWVSQAQG 416


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 8 0|=
-14 54 0|====
-13 112 3|*=======
-12 286 102|=======*=============
-11 499 533|==================================== *
-10 733 989|===================================================== *
-9 814 1021|==========================================================*
-8 723 765|==================================================== *
-7 522 482|==================================*===
-6 316 277|===================*===
-5 205 152|==========*====
-4 94 81|=====*=
-3 33 43|===*
-2 28 22|=*
-1 21 11|*=
0 15 6|*=
1 4 3|*
2 8 1|*
3 2 0|=
4 1 0|=
> 5 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 491.8524
P(chi-square) = 0

Total sequences searched: 4500

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: