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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Vibrio fischeri MJ11  

Data for CP001133  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001133.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001133_0395 CDS_449691-452285 102.0 4.5e-29 1
CP001133_1125 CDS_1262893-1265289 97.2 1e-27 1
CP001133_1134 CDS_1275647-1277947 86.6 1e-24 1
CP001133_0096 CDS_107178-108905 79.3 1.2e-22 1
CP001133_0268 CDS_302562-300352 73.9 4.2e-21 1
CP001133_0212 CDS_245340-244000 63.8 3e-18 1
CP001133_0216 CDS_247375-248763 52.8 3.8e-15 1
CP001133_0300 CDS_340929-339673 46.2 2.9e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001133_0395 1/1 352 417 .. 1 87 [] 102.0 4.5e-29
CP001133_1125 1/1 290 355 .. 1 87 [] 97.2 1e-27
CP001133_1134 1/1 240 305 .. 1 87 [] 86.6 1e-24
CP001133_0096 1/1 212 277 .. 1 87 [] 79.3 1.2e-22
CP001133_0268 1/1 368 433 .. 1 87 [] 73.9 4.2e-21
CP001133_0212 1/1 227 293 .. 1 87 [] 63.8 3e-18
CP001133_0216 1/1 239 303 .. 1 87 [] 52.8 3.8e-15
CP001133_0300 1/1 221 287 .. 1 87 [] 46.2 2.9e-13

Alignments of top-scoring domains:
CP001133_0395: domain 1 of 1, from 352 to 417: score 102.0, E = 4.5e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++++L e t+l++ q
CP001133_0 352 AKSSFLANMSHEIRTPLNGIIGMSDILTE---------TDLTPVQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+eti+ +++ ll Lind+Ldls+ie+g
CP001133_0 388 ----------SEYVETIDTSSQTLLLLINDILDLSKIESG 417

CP001133_1125: domain 1 of 1, from 290 to 355: score 97.2, E = 1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTPL++I+g++ +L e t+l++ q
CP001133_1 290 AKTTFLANMSHEIRTPLNGIIGMSGVLAE---------TKLTPIQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +++ ll Lind+Ldls+ieag
CP001133_1 326 ----------LDYLNTIETSSQTLLVLINDILDLSKIEAG 355

CP001133_1134: domain 1 of 1, from 240 to 305: score 86.6, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHE+RTP++a++g++ +L++ t l + q
CP001133_1 240 SKSRFLASMSHEIRTPMNAVLGLLAILKD---------TSLKPNQ-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++t+ +++e ll++ind+Ld+sr+ea+
CP001133_1 276 ----------KELVNTATDSSELLLSIINDILDFSRMEAN 305

CP001133_0096: domain 1 of 1, from 212 to 277: score 79.3, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++ HELRTPL++++g ael+++ t ++ q
CP001133_0 212 ATRDFVAMINHELRTPLNGLLGSAELMED---------TQITDYQ-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++leti+++++ l+ +indlLd+s++ ag
CP001133_0 248 ----------NKLLETIHQSGQMLRIIINDLLDFSKMSAG 277

CP001133_0268: domain 1 of 1, from 368 to 433: score 73.9, E = 4.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHELRTPL+aI+g++ L e e ++e+
CP001133_0 368 NKSKFIANISHELRTPLNAILGLSLYLIE---------KEENSEK-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ let+ ++++ ll+++nd+Ldls+iea
CP001133_0 404 ----------KKTLETLNKAGQGLLEMVNDILDLSKIEAD 433

CP001133_0212: domain 1 of 1, from 227 to 293: score 63.8, E = 3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f ++++HEL+TPL+ I++ +++ l +++++ +
CP001133_0 227 RLSDFSSDIAHELKTPLSNIMTQTHVTLS---------QPRTPNE-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e+l++ l+e+er+++ ind L l++ e+
CP001133_0 263 ---------YQEILSSNLEELERINKTINDTLYLAKSEND 293

CP001133_0216: domain 1 of 1, from 239 to 303: score 52.8, E = 3.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++sHELRTPL+ ++++lL++ + +++ +
CP001133_0 239 KQQRLIRDVSHELRTPLARHNLALHLLKK----------KVDPDYI- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e++++e++ +++L+ ++L++sr+e+
CP001133_0 275 -----------HLVERLENESNEMNELVGEILEFSRLENS 303

CP001133_0300: domain 1 of 1, from 221 to 287: score 46.2, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef + +sHELRTP+ +I+g a+lL + ++++
CP001133_0 221 REKEFSRFASHELRTPIMVIQGSADLLAK--------VPNQPNVA-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++++e + L + +L l + + +
CP001133_0 258 ----------LKAINRLHQASEEMTLLTETFLLLGKQDIE 287


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 15 0|===
-13 33 0|=======
-12 62 28|=====*=======
-11 119 148|======================== *
-10 241 275|================================================= *
-9 237 284|================================================ *
-8 198 213|======================================== *
-7 115 134|======================= *
-6 88 77|===============*==
-5 58 42|========*===
-4 33 22|====*==
-3 17 11|==*=
-2 10 6|=*
-1 9 3|*=
0 4 1|*
1 2 0|=
2 0 0|
> 3 13 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 77.1118
P(chi-square) = 1.844e-12

Total sequences searched: 1254

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: