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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Edwardsiella tarda EIB202  

Data for CP001135  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001135.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001135_0883 CDS_961926-964661 90.1 2.9e-25 1
CP001135_1079 CDS_1178965-1180266 89.2 5.4e-25 1
CP001135_2705 CDS_2853639-2856398 88.3 9.6e-25 1
CP001135_1902 CDS_2012852-2017414 87.3 1.9e-24 1
CP001135_2323 CDS_2457353-2454483 87.1 2.2e-24 1
CP001135_0302 CDS_331782-334574 86.3 3.6e-24 1
CP001135_2000 CDS_2117950-2119722 75.2 5.1e-21 1
CP001135_0529 CDS_574447-576783 75.0 5.7e-21 1
CP001135_3338 CDS_3539528-3538062 71.7 4.8e-20 1
CP001135_0773 CDS_856977-858374 68.6 3.6e-19 1
CP001135_3478 CDS_3690987-3692054 65.8 2.3e-18 1
CP001135_1066 CDS_1161617-1160244 62.8 1.6e-17 1
CP001135_3438 CDS_3641899-3643287 61.6 3.5e-17 1
CP001135_1656 CDS_1771199-1769736 58.8 2.2e-16 1
CP001135_2591 CDS_2736270-2738978 57.1 6.7e-16 1
CP001135_0447 CDS_492511-491147 55.5 1.9e-15 1
CP001135_3262 CDS_3451444-3450059 52.3 1.6e-14 1
CP001135_0393 CDS_437000-435927 51.2 3.2e-14 1
CP001135_1745 CDS_1863624-1864934 42.6 8.8e-12 1
CP001135_1313 CDS_1424424-1422397 35.3 1e-09 1
CP001135_1640 CDS_1747407-1745635 27.9 1.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001135_0883 1/1 388 453 .. 1 87 [] 90.1 2.9e-25
CP001135_1079 1/1 203 269 .. 1 87 [] 89.2 5.4e-25
CP001135_2705 1/1 287 352 .. 1 87 [] 88.3 9.6e-25
CP001135_1902 1/1 763 828 .. 1 87 [] 87.3 1.9e-24
CP001135_2323 1/1 472 537 .. 1 87 [] 87.1 2.2e-24
CP001135_0302 1/1 444 509 .. 1 87 [] 86.3 3.6e-24
CP001135_2000 1/1 370 435 .. 1 87 [] 75.2 5.1e-21
CP001135_0529 1/1 282 347 .. 1 87 [] 75.0 5.7e-21
CP001135_3338 1/1 267 335 .. 1 87 [] 71.7 4.8e-20
CP001135_0773 1/1 248 316 .. 1 87 [] 68.6 3.6e-19
CP001135_3478 1/1 135 200 .. 1 87 [] 65.8 2.3e-18
CP001135_1066 1/1 234 298 .. 1 87 [] 62.8 1.6e-17
CP001135_3438 1/1 238 300 .. 1 87 [] 61.6 3.5e-17
CP001135_1656 1/1 262 328 .. 1 87 [] 58.8 2.2e-16
CP001135_2591 1/1 665 732 .. 1 87 [] 57.1 6.7e-16
CP001135_0447 1/1 241 307 .. 1 87 [] 55.5 1.9e-15
CP001135_3262 1/1 233 293 .. 1 87 [] 52.3 1.6e-14
CP001135_0393 1/1 136 196 .. 1 87 [] 51.2 3.2e-14
CP001135_1745 1/1 211 271 .. 1 87 [] 42.6 8.8e-12
CP001135_1313 1/1 447 515 .. 1 87 [] 35.3 1e-09
CP001135_1640 1/1 367 436 .. 1 87 [] 27.9 1.3e-07

Alignments of top-scoring domains:
CP001135_0883: domain 1 of 1, from 388 to 453: score 90.1, E = 2.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse l ++sHE+RTPL++I+g++ lL++ +e ++eq
CP001135_0 388 NKSEHLNSISHEIRTPLNGIIGALTLLEN---------GENTPEQ-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t l+++++ll++in+lLd+srie+g
CP001135_0 424 ----------RDLLDTGLKCSRHLLEIINNLLDFSRIESG 453

CP001135_1079: domain 1 of 1, from 203 to 269: score 89.2, E = 5.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+ + ++++++qr
CP001135_1 203 ARRNFFANVSHELRTPLTVLQGYLEMFGD---------DAMPAPQR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l t++ +a+r++ L+++lL lsriea
CP001135_1 240 ----------EKALLTMQAQAQRMDGLVRQLLVLSRIEAA 269

CP001135_2705: domain 1 of 1, from 287 to 352: score 88.3, E = 9.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ + t+ls+ q+
CP001135_2 287 IKSEFLANMSHELRTPLNGVIGFTRQVMK---------TPLSATQI- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll +ind+Ld+s++eag
CP001135_2 324 -----------DYLHTIERSANNLLTIINDVLDFSKLEAG 352

CP001135_1902: domain 1 of 1, from 763 to 828: score 87.3, E = 1.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+g++ lLl+ + l+ q
CP001135_1 763 AKSAFLANMSHELRTPLNAILGMLTLLLK---------SGLTHRQ-- 798

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + + +a+ llrL+nd+Ld+s+ieag
CP001135_1 799 ----------ADYATKSEAAARALLRLLNDILDYSKIEAG 828

CP001135_2323: domain 1 of 1, from 472 to 537: score 87.1, E = 2.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +l+ee
CP001135_2 472 SKSMFLATVSHELRTPLYGIIGNLDLLRT---------KTLPEEV-- 507

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + +++ ll++ind+Ld+s+ie++
CP001135_2 508 ----------QRLLGAMSNSSGLLLKIINDILDFSKIESE 537

CP001135_0302: domain 1 of 1, from 444 to 509: score 86.3, E = 3.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++I+g+a+lL e ++ s++
CP001135_0 444 AKSAFLAAMSHEIRTPLHGILGTAQLLAE---------QPISPQS-- 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ i +++e+ll+ +nd+Ld+s ieag
CP001135_0 480 ----------RGYVQAINDSGESLLAVLNDVLDYSAIEAG 509

CP001135_2000: domain 1 of 1, from 370 to 435: score 75.2, E = 5.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE R+PLtaIrgy+++++ ++ + +
CP001135_2 370 TLGELMAGVAHEVRNPLTAIRGYVQIIRQ---------QTTQPAH-- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+++l+e++++++ i++lLd+sr ++
CP001135_2 406 ----------QEYLSVVLKEIDSINKVIQQLLDFSRPRQS 435

CP001135_0529: domain 1 of 1, from 282 to 347: score 75.0, E = 5.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ tel+eeq
CP001135_0 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------TELNEEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
CP001135_0 318 ----------LKYLKTIHVSAIALGNIFNDIIEMDKLERR 347

CP001135_3338: domain 1 of 1, from 267 to 335: score 71.7, E = 4.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ ++sH+LRTPLt++ gy+e+L ++++ls+ +r
CP001135_3 267 QRREFITTVSHDLRTPLTSLHGYLETLSL-------KRDTLSAADR- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+t+l +++ rL ++l +l+r+e g
CP001135_3 306 ----------RRYLDTALAQSQKVGRLAQQLFELARLEYG 335

CP001135_0773: domain 1 of 1, from 248 to 316: score 68.6, E = 3.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl++lsHEL+TPL+++r +elL +++ ++ls++q
CP001135_0 248 QRHEFLRHLSHELKTPLASLREGTELLADGVA------GPLSADQ-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +++++++rl+ Li++lLd+ r a
CP001135_0 287 ----------REVVAILDDSSRRLQVLIEQLLDYNRRLAD 316

CP001135_3478: domain 1 of 1, from 135 to 200: score 65.8, E = 2.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001135_3 135 AARDLVRGLAHEIKNPLGGLRGAAQLLAR----------ALPDPAL- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL r ++
CP001135_3 171 ----------TEYTQVIIEQADRLRNLVDRLLGPQRPGQR 200

CP001135_1066: domain 1 of 1, from 234 to 298: score 62.8, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sHELRTPL+++rg +e+L++++ l+++
CP001135_1 234 IRRALMADVSHELRTPLAVLRGELEALQDGV-------RRLTPDS-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++ e+ l +L+ndl +ls +ag
CP001135_1 272 -------------LTSLQAEVSILTKLVNDLHQLSLSDAG 298

CP001135_3438: domain 1 of 1, from 238 to 300: score 61.6, E = 3.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ l+++ + +
CP001135_3 238 AQQRLISDISHELRTPLTRLQLATALMRR---------RHGEYSE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+ ea rl+++indlL lsr ++
CP001135_3 274 -------------LARIETEALRLDSMINDLLALSRNQHK 300

CP001135_1656: domain 1 of 1, from 262 to 328: score 58.8, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a+++HE+RTP+t +++ +e+ l ++++ ++
CP001135_1 262 RQANFSADIAHEMRTPITNLITQSEIVLS---------QTRTQSEL- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + + l+e +r+ +++nd+L l++++++
CP001135_1 299 ----------EEVIYSNLEEYQRMAKMVNDMLFLAQADSQ 328

CP001135_2591: domain 1 of 1, from 665 to 732: score 57.1, E = 6.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l a++ + ++q
CP001135_2 665 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL----ASERSAHAPQ-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i++++ +rL+n+lLd++ri++g
CP001135_2 706 -------------AEEIRQQILNTSRLVNNLLDMARIQSG 732

CP001135_0447: domain 1 of 1, from 241 to 307: score 55.5, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELRTPL+a+r ae+ + + + r
CP001135_0 241 RERRFTSDAAHELRTPLAALRVQAEVVQL---------AQDDLALR- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ ++r rL+++lL+lsr+++
CP001135_0 278 ----------QRALGQLEQGIDRATRLVDQLLTLSRLDSL 307

CP001135_3262: domain 1 of 1, from 233 to 293: score 52.3, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ ++
CP001135_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSP---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
CP001135_3 264 ----------AYLAESINKDTEECNAIIEQFIDYLRTGQE 293

CP001135_0393: domain 1 of 1, from 136 to 196: score 51.2, E = 3.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL+++r+++el++ + +e +
CP001135_0 136 QERLFTADAAHELRTPLAGVRLHLELMEQ---------SGVPEAT-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
t+ + +++l + +++lL lsr +++
CP001135_0 172 ---------------TLVQRIDQLMHTVEQLLMLSRVGQN 196

CP001135_1745: domain 1 of 1, from 211 to 271: score 42.6, E = 8.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r + + ls+e++
CP001135_1 211 SKKQLIDGIAHELRTPLVRLRYRLAMSDS-----------LSAEEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i r++ +l+ Li++lL+++r++ +
CP001135_1 246 --------------AAINRDIGQLEGLIDELLTYARLDRP 271

CP001135_1313: domain 1 of 1, from 447 to 515: score 35.3, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ +++ +l + q++
CP001135_1 447 VVGQTMTTLAHEINQPLNALSMYLFSARR----------ALESGQQA 483

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + l++ + + r++++i+ l++++r
CP001135_1 484 QA--------EATLQKCDGLIGRMDAIIRSLRQFARRADD 515

CP001135_1640: domain 1 of 1, from 367 to 436: score 27.9, E = 1.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ +l+HEL++PL aI+ ya+ +l +++ ++ ++++
CP001135_1 367 IVGELGTSLAHELNQPLEAIKNYADGCLLRAE------RQAPVDTLI 407

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+ l i++++ r ++++ +l+ l r +
CP001135_1 408 PA-----------LGHIRQQVSRADAIVKRLRSLIRRTPE 436


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 4 0|=
-14 49 0|=====
-13 86 2|*=======
-12 183 80|=======*=========
-11 350 419|================================ *
-10 522 777|================================================ *
-9 613 803|======================================================== *
-8 614 601|======================================================*=
-7 435 378|==================================*=====
-6 294 218|===================*=======
-5 166 119|==========*=====
-4 77 64|=====*=
-3 43 33|==*=
-2 25 17|=*=
-1 27 9|*==
0 9 4|*
1 8 2|*
2 5 1|*
3 1 0|=
> 4 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 364.5692
P(chi-square) = 0

Total sequences searched: 3536

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: