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Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Vibrio fischeri MJ11  

Data for CP001139  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001139.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001139_2109 CDS_2328093-2330888 99.8 3.8e-28 1
CP001139_1668 CDS_1842653-1839777 96.0 4.5e-27 1
CP001139_1321 CDS_1463778-1461700 81.0 8.4e-23 1
CP001139_0699 CDS_764153-766387 79.8 1.8e-22 1
CP001139_2046 CDS_2253982-2252687 78.2 5e-22 1
CP001139_2165 CDS_2397074-2400454 77.0 1.1e-21 1
CP001139_2150 CDS_2369607-2367241 69.4 1.6e-19 1
CP001139_0093 CDS_110440-109397 62.1 1.9e-17 1
CP001139_1909 CDS_2114076-2113015 51.2 2.3e-14 1
CP001139_2401 CDS_2682031-2678591 50.4 3.8e-14 1
CP001139_1431 CDS_1566928-1564886 49.9 5.3e-14 1
CP001139_2368 CDS_2643114-2644502 46.7 4.2e-13 1
CP001139_0112 CDS_129202-130506 45.2 1.1e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001139_2109 1/1 289 354 .. 1 87 [] 99.8 3.8e-28
CP001139_1668 1/1 455 520 .. 1 87 [] 96.0 4.5e-27
CP001139_1321 1/1 327 392 .. 1 87 [] 81.0 8.4e-23
CP001139_0699 1/1 368 433 .. 1 87 [] 79.8 1.8e-22
CP001139_2046 1/1 205 272 .. 1 87 [] 78.2 5e-22
CP001139_2165 1/1 452 520 .. 1 87 [] 77.0 1.1e-21
CP001139_2150 1/1 282 347 .. 1 87 [] 69.4 1.6e-19
CP001139_0093 1/1 127 192 .. 1 87 [] 62.1 1.9e-17
CP001139_1909 1/1 125 191 .. 1 87 [] 51.2 2.3e-14
CP001139_2401 1/1 789 854 .. 1 87 [] 50.4 3.8e-14
CP001139_1431 1/1 449 516 .. 1 87 [] 49.9 5.3e-14
CP001139_2368 1/1 247 309 .. 1 87 [] 46.7 4.2e-13
CP001139_0112 1/1 226 286 .. 1 87 [] 45.2 1.1e-12

Alignments of top-scoring domains:
CP001139_2109: domain 1 of 1, from 289 to 354: score 99.8, E = 3.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ t lse q
CP001139_2 289 VKSEFLANMSHELRTPLNGVIGFTRQMLK---------TSLSENQ-- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+r+a+ ll +ind+Ld+s++eag
CP001139_2 325 ----------QDYLQTIERSANNLLTIINDILDFSKLEAG 354

CP001139_1668: domain 1 of 1, from 455 to 520: score 96.0, E = 4.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g+ elL+ + l+++q
CP001139_1 455 AKSAFLATMSHEIRTPLNGVLGTGELLRG---------SGLTAQQ-- 490

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i r++e ll+L+nd+Ld+s+ieag
CP001139_1 491 ----------KQYVDIINRSGENLLDLLNDILDYSKIEAG 520

CP001139_1321: domain 1 of 1, from 327 to 392: score 81.0, E = 8.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++I+g++++ + lseeq
CP001139_1 327 AKSQFLAMMSHEIRTPLNSILGLVDIFHG---------SLLSEEQ-- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++++++ ll +i+d+Ld+srieag
CP001139_1 363 ----------LDWLNQMESSSQLLLTIISDVLDISRIEAG 392

CP001139_0699: domain 1 of 1, from 368 to 433: score 79.8, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla +sHE+RTPL++I+g ++lL+ ++l+ eq
CP001139_0 368 VKSDFLARMSHEIRTPLNGILGISSLLKS---------SNLNREQ-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++++ +e+ll+ +nd+Ld+s+ie++
CP001139_0 404 ----------QKQVNILHQGGEHLLAVLNDILDFSQIEQE 433

CP001139_2046: domain 1 of 1, from 205 to 272: score 78.2, E = 5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an+sHELRTP+t++rgy+e+ ++ +++
CP001139_2 205 MRRNFFANVSHELRTPMTVLRGYLEMSED---------PDMLVGP-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++ +++ r++ L+++lL+ls+iea
CP001139_2 241 --------MWNRAHGVMTEQLSRMEGLVEQLLTLSKIEAA 272

CP001139_2165: domain 1 of 1, from 452 to 520: score 77.0, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+ sHELRTPL+++ g ae+L ++++ ++ s+ +
CP001139_2 452 LKDEFLATTSHELRTPLHGMVGIAEALYTGAN------GPISASH-- 490

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le+i+++++rl +L+ndlLd+ ++++g
CP001139_2 491 ----------RHQLEIIINSGQRLTSLVNDLLDYHKMRHG 520

CP001139_2150: domain 1 of 1, from 282 to 347: score 69.4, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ + l++eq
CP001139_2 282 DKTTFISTISHELRTPLNGIVGLSRMLLD---------SRLDDEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +ti +a l ++ nd+ d+ + +
CP001139_2 318 ----------HNYMRTINVSAITLGNIFNDIIDMDKFDRR 347

CP001139_0093: domain 1 of 1, from 127 to 192: score 62.1, E = 1.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++l+HE+++PL ++rg+a+lL++ l+e ++
CP001139_0 127 AAKVLVRSLAHEIKNPLGGLRGAAQLLER----------MLPEREL- 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++i+++a+rl++L+++lL ++++
CP001139_0 163 ----------HEYTQIIIEQADRLRNLVDRLLGPQKLGTK 192

CP001139_1909: domain 1 of 1, from 125 to 191: score 51.2, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+ RTPL++ ++ya+ L ++l++ ++
CP001139_1 125 SLGKMVASLAHQVRTPLSSAMLYASNLGS---------PNLPAATH- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ + ++ l++++nd+L +++ + +
CP001139_1 162 ----------KRFQTKLVDRLHDLEKQVNDMLLFAKGGDN 191

CP001139_2401: domain 1 of 1, from 789 to 854: score 50.4, E = 3.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+++la++sH+L +PL+a r++a+ L e +++ e+
CP001139_2 789 SKTRLLAAVSHDLMQPLNAARLFASSLNE---------VAKDQET-- 824

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i++++ ++Li dlLd+sr+eag
CP001139_2 825 ----------QKISGHIESALGAAEELIGDLLDISRLEAG 854

CP001139_1431: domain 1 of 1, from 449 to 516: score 49.9, E = 5.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE+++P ++I+g+ael++ el+ee +
CP001139_1 449 SLGELTAGIAHEINNPTAVILGNAELIKY----------ELGEEAHV 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e leti ++++r++++ + lL++sr +
CP001139_1 486 ---------IAEELETIMEQIDRIRNITRSLLQYSRQGGI 516

CP001139_2368: domain 1 of 1, from 247 to 309: score 46.7, E = 4.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELR PLt +r+++ l+ + + +
CP001139_2 247 GQQRLLSDISHELRSPLTRLRMATALATR---------KQGESAE-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ ea+rl+++i++lL+lsri+ +
CP001139_2 283 -------------LSRIDMEADRLEQMISELLELSRIQVN 309

CP001139_0112: domain 1 of 1, from 226 to 286: score 45.2, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH++RTPLt Ir+++e++ e+
CP001139_0 226 DRALLMAGVSHDIRTPLTRIRLATEMMSP--------------ED-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++++++e ++++i +++d+ + a
CP001139_0 257 ----------SYLAESMIKDTEECNEIIGQFMDYLKPVAK 286


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 8 0|=
-13 38 1|*====
-12 122 59|======*=======
-11 251 307|============================ *
-10 427 569|================================================ *
-9 517 588|==========================================================*
-8 395 440|============================================ *
-7 342 277|==============================*=======
-6 199 159|=================*=====
-5 113 87|=========*===
-4 69 46|=====*==
-3 43 24|==*==
-2 20 12|=*=
-1 15 6|*=
0 9 3|*
1 2 1|*
2 3 0|=
> 3 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 195.3494
P(chi-square) = 6.852e-36

Total sequences searched: 2590

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: