Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Dictyoglomus thermophilum H-6-12  

Data for CP001146  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001146.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001146_0579 CDS_587763-590210 103.0 3.6e-29 1
CP001146_1073 CDS_1089310-1088258 69.9 8.7e-20 1
CP001146_1802 CDS_1832921-1831686 65.8 1.2e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001146_0579 1/1 467 533 .. 1 87 [] 103.0 3.6e-29
CP001146_1073 1/1 119 186 .. 1 87 [] 69.9 8.7e-20
CP001146_1802 1/1 202 269 .. 1 87 [] 65.8 1.2e-18

Alignments of top-scoring domains:
CP001146_0579: domain 1 of 1, from 467 to 533: score 103.0, E = 3.6e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+an+sHEL+TPLtaI+gy+elL + +l++e++
CP001146_0 467 MKSEFVANVSHELKTPLTAIKGYSELLIK---------MNLPPEKV- 503

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y ++i++e+erl +LindlL+ srie+g
CP001146_0 504 ----------RNYYQIIYKESERLTQLINDLLEVSRIESG 533

CP001146_1073: domain 1 of 1, from 119 to 186: score 69.9, E = 8.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
efl n+sHELRTPLt+I+ +++l e + + +++
CP001146_1 119 NFKEFLGNASHELRTPLTSIQILIDLFSE---------RKITLDEI- 155

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e++ +++e+er+++L+++lL lsr+eag
CP001146_1 156 ---------YNEFFPYLRKEVERMSKLVSNLLNLSRLEAG 186

CP001146_1802: domain 1 of 1, from 202 to 269: score 65.8, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef +++sHEL+TPLt+I+gy+ +L++ +++ + + +
CP001146_1 202 REEEFSSDISHELKTPLTSILGYIRMLKR--------WGKEDKKVL- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+++++ + + ++++ lL++sr +
CP001146_1 240 ----------EESLDILESTTLDMINMVDTLLEISRVPED 269


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 15 0|===
-13 35 1|*=====
-12 109 43|=======*===========
-11 218 226|=====================================*
-10 343 420|==========================================================*
-9 337 434|========================================================= *
-8 327 325|======================================================*
-7 193 204|=================================*
-6 140 117|===================*====
-5 86 64|==========*====
-4 46 34|=====*==
-3 25 18|==*==
-2 12 9|=*
-1 12 5|*=
0 7 2|*=
1 2 1|*
2 0 0|
3 0 0|
> 4 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 162.3505
P(chi-square) = 4.406e-29

Total sequences searched: 1912

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: