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Thermotogae
Classification of phyla is from NCBI page
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25 projects found  

1 accessions found for Thermodesulfovibrio yellowstonii DSM 11347  

Data for CP001147  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001147.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001147_0179 CDS_191090-189234 111.4 1.6e-31 1
CP001147_1295 CDS_1302060-1299388 98.9 5.5e-28 1
CP001147_0154 CDS_161090-162268 94.1 1.2e-26 1
CP001147_0601 CDS_601592-599730 67.3 5e-19 1
CP001147_0739 CDS_744137-742764 62.7 1e-17 1
CP001147_1434 CDS_1429048-1426394 60.0 5.7e-17 1
CP001147_0732 CDS_737088-735619 59.1 1e-16 1
CP001147_0712 CDS_714504-716693 59.0 1.1e-16 1
CP001147_1350 CDS_1356598-1355225 58.9 1.2e-16 1
CP001147_1081 CDS_1084610-1086220 54.2 2.5e-15 1
CP001147_0122 CDS_129142-127208 50.9 2.2e-14 1
CP001147_1438 CDS_1432584-1433804 49.8 4.4e-14 1
CP001147_0735 CDS_738917-740752 44.4 1.5e-12 1
CP001147_1293 CDS_1299020-1297950 42.2 6.5e-12 1
CP001147_1325 CDS_1337608-1335611 40.7 1.7e-11 1
CP001147_1738 CDS_1728795-1730207 40.7 1.7e-11 1
CP001147_0256 CDS_263254-264345 39.8 3e-11 1
CP001147_1874 CDS_1855057-1853156 37.1 1.8e-10 1
CP001147_1209 CDS_1214473-1213688 35.5 4.9e-10 1
CP001147_0730 CDS_734242-732539 31.9 5.2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001147_0179 1/1 387 455 .. 1 87 [] 111.4 1.6e-31
CP001147_1295 1/1 300 368 .. 1 87 [] 98.9 5.5e-28
CP001147_0154 1/1 163 230 .. 1 87 [] 94.1 1.2e-26
CP001147_0601 1/1 371 453 .. 1 87 [] 67.3 5e-19
CP001147_0739 1/1 229 295 .. 1 87 [] 62.7 1e-17
CP001147_1434 1/1 652 713 .. 1 83 [. 60.0 5.7e-17
CP001147_0732 1/1 248 316 .. 1 87 [] 59.1 1e-16
CP001147_0712 1/1 507 573 .. 1 87 [] 59.0 1.1e-16
CP001147_1350 1/1 234 298 .. 1 87 [] 58.9 1.2e-16
CP001147_1081 1/1 322 387 .. 1 87 [] 54.2 2.5e-15
CP001147_0122 1/1 429 495 .. 1 87 [] 50.9 2.2e-14
CP001147_1438 1/1 197 262 .. 1 87 [] 49.8 4.4e-14
CP001147_0735 1/1 380 443 .. 1 87 [] 44.4 1.5e-12
CP001147_1293 1/1 140 206 .. 1 87 [] 42.2 6.5e-12
CP001147_1325 1/1 452 523 .. 1 87 [] 40.7 1.7e-11
CP001147_1738 1/1 253 323 .. 1 87 [] 40.7 1.7e-11
CP001147_0256 1/1 152 217 .. 1 87 [] 39.8 3e-11
CP001147_1874 1/1 274 339 .. 1 87 [] 37.1 1.8e-10
CP001147_1209 1/1 20 86 .. 1 87 [] 35.5 4.9e-10
CP001147_0730 1/1 340 412 .. 1 87 [] 31.9 5.2e-09

Alignments of top-scoring domains:
CP001147_0179: domain 1 of 1, from 387 to 455: score 111.4, E = 1.6e-31
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL++I+g++e+L+++l+ ++l+e+q
CP001147_0 387 AKSEFLANMSHELRTPLNSIIGFTEVLQDQLF------GTLNEKQ-- 425

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ i+++a++ll+Lind+Ldls+ie+g
CP001147_0 426 ----------LEYLKDIHDSAKHLLNLINDILDLSKIEEG 455

CP001147_1295: domain 1 of 1, from 300 to 368: score 98.9, E = 5.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f+an+sHELRTP++aI+gy++lLl+e+d ++l+++q
CP001147_1 300 LKSAFIANMSHELRTPMNAIIGYTDLLLDEVD------GPLNDDQ-- 338

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ a++ll+Lind+Ld+s+ie+g
CP001147_1 339 ----------KTSLKKVAANARHLLQLINDVLDISKIESG 368

CP001147_0154: domain 1 of 1, from 163 to 230: score 94.1, E = 1.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+taI+gyae+Ll+ ++ +++++
CP001147_0 163 VRRDFVANVSHELKTPVTAIKGYAETLLD---------GAINDKENS 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e+i+++a+rl++L++dlL+lsrie g
CP001147_0 201 ----------KKFIEIIKNQADRLNALVEDLLTLSRIEFG 230

CP001147_0601: domain 1 of 1, from 371 to 453: score 67.3, E = 5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+ +sHELRTPLt+I+g++e++ +++ + l+ ++
CP001147_0 371 LKTEFITVVSHELRTPLTSILGFIEIINKKFT-----ENILPHLDM- 411

peLRl..edpeyreyletilreaerllrLindlLdlsrieag<-*
+ Rl++ + + + +++il+e+er+ +Lind+Ld+s++e+g
CP001147_0 412 NNFRLskAVNKINKNFKIILSEGERITSLINDVLDISKLESG 453

CP001147_0739: domain 1 of 1, from 229 to 295: score 62.7, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f++++sHELRTPL++I+ ++e+ l+ e+s e+
CP001147_0 229 RQKQFVSDASHELRTPLSVILSHSEITLR---------RERSTEE-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l i+++a+ +l++i++lL l+r+ +
CP001147_0 265 ---------YKNALIAIKDAAKIMLNMIERLLMLARLSSD 295

CP001147_1434: domain 1 of 1, from 652 to 713: score 60.0, E = 5.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a ++HE+R+PL aI g+a+ L + +l ee+
CP001147_1 652 ALGEMAAKVAHEIRNPLLAIGGFAKRLDK----------DLKEEKS- 687

peLRledpeyreyletilreaerllrLindlLdlsr<-*
+ey+++i++e++rl+r++n++L + +
CP001147_1 688 ----------KEYIKVIIEEVKRLERILNEILSFVK 713

CP001147_0732: domain 1 of 1, from 248 to 316: score 59.1, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l++++HEL++PL+ I++ +++L ee ++ + e +
CP001147_0 248 SLGTLLSGIAHELNNPLSNISTSCQILIEEI-------EDSDMEYK- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ i++++er ++i+ +Ld+sr +
CP001147_0 287 ----------KELLQAIESQTERAKNIIRTVLDFSRRKEL 316

CP001147_0712: domain 1 of 1, from 507 to 573: score 59.0, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE+++PL+ I+g++++Lle + +e q
CP001147_0 507 SLGTLAAGVAHEINNPLAIILGFTDILLE---------KTSPESQE- 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ti+++a r++++lL + r +
CP001147_0 544 ----------YDILKTIEKQATNAKRIVENLLSFVRHKEH 573

CP001147_1350: domain 1 of 1, from 234 to 298: score 58.9, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++sHE+RTP+t +rg +e++ ++ +l+ e+
CP001147_1 234 ARRQWIADISHEIRTPVTILRGEVEAIIDGI-------RPLNLET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i++e+ rl+rL++dl +l+ + g
CP001147_1 272 -------------INSIHNEILRLNRLVEDLYQLAISDIG 298

CP001147_1081: domain 1 of 1, from 322 to 387: score 54.2, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ e++ +++HE+++PL+aI++ ++ L++ + e +
CP001147_1 322 AMAEMAMTVAHEIKNPLNAIKASTSYLKA----------NFQGEVL- 357

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l++i++e+erl++Li +L ++r
CP001147_1 358 ----------KEFLSIIDKETERLNELITSFLSYARPVPL 387

CP001147_0122: domain 1 of 1, from 429 to 495: score 50.9, E = 2.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ a+l+HE+++PL +Ir+ L + te++e+++
CP001147_0 429 AIGQLSAGLAHEINNPLGGIRLCFNNLIN---------TEMDEKTK- 465

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i + + ++++i +lLd+s+ +
CP001147_0 466 ----------NMHVEVINHGLTKIQEIIKQLLDFSKQTEL 495

CP001147_1438: domain 1 of 1, from 197 to 262: score 49.8, E = 4.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s + l+HE+R+PL +I+g+a+ L + + ++ +
CP001147_1 197 NLSLLSKVLAHEIRNPLGSIKGFAQYLFK----------KIPDISL- 232

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl++i++e+ rl+rL n+l ++ e+
CP001147_1 233 ----------KEYLDIIIKESMRLERLTNELSIYANPENV 262

CP001147_0735: domain 1 of 1, from 380 to 443: score 44.4, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+l H L++PL++I g+a+lL++ ++++
CP001147_0 380 EVGQLVAGLVHNLNNPLNGIHGFAQLLKM-----------KNSDN-- 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + il+++e + ++i ++L +r+e+
CP001147_0 414 ----------AEMCDMILSATENMKNIIKNVLSKTRLEQS 443

CP001147_1293: domain 1 of 1, from 140 to 206: score 42.2, E = 6.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +lsHE+R+P+ +I g+++ ++l ++ ++ +
CP001147_1 140 SVRKLIDSLSHEIRNPIVSIAGFTKKVYDNL-------PPGDPNK-- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl til+eaerl+rL+ ++L l i g
CP001147_1 178 -----------PYLMTILQEAERLERLLKEILNLKMIAIG 206

CP001147_1325: domain 1 of 1, from 452 to 523: score 40.7, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++++e L + ++ ++
CP001147_1 452 AWEEVARRLAHEIKNPLTPIKLATERLVK---------KWKNKDE-- 487

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++d +++ +++i++e+e+l +Li+ + l ++ +
CP001147_1 488 ----EFDKVFEKSTQRIISEVESLKNLIDAFQKLGKLPEI 523

CP001147_1738: domain 1 of 1, from 253 to 323: score 40.7, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ ++++HE+R+PL+ I + ++ L e+l k +e+++
CP001147_1 253 AIGQLSRTIAHEIRNPLNFINLSIDHLIEKLKK-----EEQNANN-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ++le++++e+ r ++Li + L+++r
CP001147_1 293 ---------YTKLLESMKQEIYRVNNLITEYLEYTRPLKL 323

CP001147_0256: domain 1 of 1, from 152 to 217: score 39.8, E = 3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ ++HE+R+PL +I ++a ++ e +l e +
CP001147_0 152 AMGSLVMKIAHEIRNPLGSIELFANMISE----------DLKESIH- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++i ++++ l++ ++++L ++r ++
CP001147_0 188 ----------GDYARRISSSVRMLRNTLENMLSFTRGINP 217

CP001147_1874: domain 1 of 1, from 274 to 339: score 37.1, E = 1.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + ++HE+++ Lt+I+g+a lL + + e+ +
CP001147_1 274 SLGMLSGRVAHEFNNILTGILGFAGLLHT----------KIEEPIL- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i++++e ++L lL +sr e+
CP001147_1 310 ----------KNFVEKIIDAGEKARDLAKKLLVFSRKEEI 339

CP001147_1209: domain 1 of 1, from 20 to 86: score 35.5, E = 4.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ +++H++++ Lt I+g++ l + +l ++ +
CP001147_1 20 AAALLANGIAHDFNNLLTPILGFSGLVESKL--------GANHPL-- 56

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e i+++ae +Li +lL +sr ++
CP001147_1 57 ----------YPYVEHIHSSAEKAKELIKRLLSFSRKDTT 86

CP001147_0730: domain 1 of 1, from 340 to 412: score 31.9, E = 5.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+++PL+ I a l+++ l+++++ s + +
CP001147_0 340 SIGRLAAGVAHEINNPLAIINEKAGLMKD-----LLEYGDISQNKER 381

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++i++++ r++ + +lL +s+
CP001147_0 382 ---------FIQLISSIQDSVTRCRTITHRLLSFSKKIDK 412


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 13 0|==
-13 28 1|*===
-12 126 46|======*===========
-11 207 240|============================== *
-10 408 447|==========================================================*
-9 385 461|======================================================= *
-8 286 345|========================================= *
-7 192 217|============================ *
-6 138 125|=================*==
-5 84 68|=========*==
-4 60 36|=====*===
-3 34 19|==*==
-2 22 10|=*==
-1 7 5|*
0 3 2|*
1 6 1|*
2 5 0|=
3 2 0|=
> 4 26 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 214.7858
P(chi-square) = 1.191e-309

Total sequences searched: 2033

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: