Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Thermodesulfovibrio yellowstonii DSM 11347  

Data for CP001147  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001147.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001147_0366 CDS_356531-358711 54.5 4.5e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001147_0366 1/1 527 592 .. 1 70 [] 54.5 4.5e-16

Alignments of top-scoring domains:
CP001147_0366: domain 1 of 1, from 527 to 592: score 54.5, E = 4.5e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ IA E+HD++gQsL+a+kl l+++++++ +++ + + +de
CP001147_0 527 ERKEIAKEIHDELGQSLTALKLSLSWIKKRV--EDE--FLNKKFDET 569

relarealaevRrllgdLRpaal<-*
++++ +++v ++ +LRp+
CP001147_0 570 LTIVNALIKQVQNISNRLRPSLI 592


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 34 0|=====
-13 78 0|==========
-12 100 22|==*==========
-11 151 186|=================== *
-10 443 432|=====================================================*==
-9 428 490|====================================================== *
-8 256 378|================================ *
-7 210 237|=========================== *
-6 139 134|================*=
-5 81 72|========*==
-4 44 37|====*=
-3 27 19|==*=
-2 19 9|=*=
-1 8 5|*
0 10 2|*=
1 1 1|*
2 2 0|=
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 336.2881
P(chi-square) = 0

Total sequences searched: 2033

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: