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Classification of phyla is from NCBI page
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132 projects found  

4 accessions found for Rhodobacter sphaeroides KD131  

Data for CP001150  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001150.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001150_2756 CDS_2807219-2809768 86.6 2.5e-24 1
CP001150_1232 CDS_1259879-1258839 85.3 5.9e-24 1
CP001150_1510 CDS_1539056-1536372 79.6 2.5e-22 1
CP001150_2964 CDS_3022193-3019716 77.8 8.2e-22 1
CP001150_2666 CDS_2709115-2711778 73.3 1.5e-20 1
CP001150_3083 CDS_3135705-3137423 67.7 5.8e-19 1
CP001150_1401 CDS_1436775-1434166 65.1 3.2e-18 1
CP001150_0722 CDS_718998-717271 64.1 5.9e-18 1
CP001150_1823 CDS_1858026-1859357 61.6 3.1e-17 1
CP001150_1196 CDS_1217910-1215709 57.4 4.8e-16 1
CP001150_1123 CDS_1140013-1138940 56.0 1.2e-15 1
CP001150_1542 CDS_1571719-1570400 49.8 7.1e-14 1
CP001150_1786 CDS_1820736-1818526 48.0 2.2e-13 1
CP001150_0905 CDS_912690-914123 47.1 3.9e-13 1
CP001150_1121 CDS_1137461-1135212 46.8 4.9e-13 1
CP001150_2914 CDS_2968158-2969495 44.2 2.7e-12 1
CP001150_0440 CDS_425622-427385 43.1 5.5e-12 1
CP001150_2281 CDS_2312670-2310766 41.9 1.2e-11 1
CP001150_2450 CDS_2488886-2487486 37.6 2e-10 1
CP001150_1846 CDS_1879207-1882032 35.1 1e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001150_2756 1/1 338 403 .. 1 87 [] 86.6 2.5e-24
CP001150_1232 1/1 115 182 .. 1 87 [] 85.3 5.9e-24
CP001150_1510 1/1 668 734 .. 1 87 [] 79.6 2.5e-22
CP001150_2964 1/1 336 401 .. 1 87 [] 77.8 8.2e-22
CP001150_2666 1/1 663 730 .. 1 87 [] 73.3 1.5e-20
CP001150_3083 1/1 343 408 .. 1 87 [] 67.7 5.8e-19
CP001150_1401 1/1 367 433 .. 1 87 [] 65.1 3.2e-18
CP001150_0722 1/1 206 271 .. 1 87 [] 64.1 5.9e-18
CP001150_1823 1/1 196 291 .. 1 87 [] 61.6 3.1e-17
CP001150_1196 1/1 374 439 .. 1 87 [] 57.4 4.8e-16
CP001150_1123 1/1 122 186 .. 1 87 [] 56.0 1.2e-15
CP001150_1542 1/1 233 291 .. 1 87 [] 49.8 7.1e-14
CP001150_1786 1/1 365 431 .. 1 87 [] 48.0 2.2e-13
CP001150_0905 1/1 84 149 .. 1 87 [] 47.1 3.9e-13
CP001150_1121 1/1 501 572 .. 1 87 [] 46.8 4.9e-13
CP001150_2914 1/1 194 260 .. 1 87 [] 44.2 2.7e-12
CP001150_0440 1/1 363 431 .. 1 87 [] 43.1 5.5e-12
CP001150_2281 1/1 407 477 .. 1 87 [] 41.9 1.2e-11
CP001150_2450 1/1 244 308 .. 1 87 [] 37.6 2e-10
CP001150_1846 1/1 537 601 .. 1 87 [] 35.1 1e-09

Alignments of top-scoring domains:
CP001150_2756: domain 1 of 1, from 338 to 403: score 86.6, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++I g+a+lL e t l+e+q
CP001150_2 338 AKSAFLANMSHEIRTPMNGIVGMADLLCE---------TVLTEDQ-- 373

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + eti++++e ll +ind+Ld+s+iea+
CP001150_2 374 ----------RLFSETIRSSGEALLVIINDILDYSKIEAN 403

CP001150_1232: domain 1 of 1, from 115 to 182: score 85.3, E = 5.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLta++g++e+L+ ++++++ ++
CP001150_1 115 IRRDFVANVSHELRTPLTALLGFIETLQG---------AARDDPAAR 152

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ rea r++rL++dlL lsr e++
CP001150_1 153 ----------SRFLGIMAREAGRMNRLVQDLLSLSRVESE 182

CP001150_1510: domain 1 of 1, from 668 to 734: score 79.6, E = 2.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+ +sHELRTP+t+Ir+++e+L + ++l++e +
CP001150_1 668 QKDAFLSQISHELRTPMTSIRAFSEILMD---------GDLPPEMA- 704

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++ea rl rL++dlLdls +e+g
CP001150_1 705 ----------ARHARIIHDEAIRLTRLLDDLLDLSVLENG 734

CP001150_2964: domain 1 of 1, from 336 to 401: score 77.8, E = 8.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +fla +sHE+RTPL+++ g +elL t+l++ q
CP001150_2 336 TKADFLAVMSHEMRTPLNGLAGSLELLAQ---------TPLDPRQ-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++++ +ae ll+ +n +Ld++r ea
CP001150_2 372 ----------RELVSVLRASAEILLDHVNSVLDIARSEAR 401

CP001150_2666: domain 1 of 1, from 663 to 730: score 73.3, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL +I+g+a L e ++l++e +
CP001150_2 663 LRTALLSSVSHDLRTPLVTIIGAAGSLAE--------PGALPPEAQ- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + eti++e+erl+r +++lLd++r+++g
CP001150_2 701 ----------QALAETIREEGERLDRYVQNLLDMTRLGHG 730

CP001150_3083: domain 1 of 1, from 343 to 408: score 67.7, E = 5.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HE+++PL+++r ++ +++ +++ ++
CP001150_3 343 ANEQFAADVAHEIKNPLASLRSAVGTMRL---------AKREDQR-- 378

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rL++d+ sr++++
CP001150_3 379 ----------EQLLDVIEHDVRRLDRLVSDISNASRLDSE 408

CP001150_1401: domain 1 of 1, from 367 to 433: score 65.1, E = 3.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL++++++++lL++ +t+l+e q
CP001150_1 367 AKSRFLAVMSHEMRTPLNGLMAASDLLQT--------STDLTERQ-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++++ ++ l+++n++L+l+r+
CP001150_1 404 ----------RWLTDIVIGCGSAALDQVNNVLELTRLSDK 433

CP001150_0722: domain 1 of 1, from 206 to 271: score 64.1, E = 5.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHELRTPL+aI+g ++ l+ ++ ++
CP001150_0 206 TKDRFLAQMSHELRTPLNAILGIGHAELR---------GASDPVS-- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +++r+ae l+ +++d+Ld+s ++g
CP001150_0 242 ----------RDRLGVLIRSAEGLSTMLDDILDMSAVQQG 271

CP001150_1823: domain 1 of 1, from 196 to 291: score 61.6, E = 3.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldk..v.lagdtelsee
+++++la+++HEL++P++ + ++a++L +++ k ++ + + ++ +
CP001150_1 196 SLGRLLAGVAHELNNPISFVYANAHALGRYATKfeQyFEQVQAGAPR 242

qrlpeLR.l.....edpeyreyletilreaerllrLindlLdlsrieag<
++l +LR++ + ++e+++ r++++ +++ aer +++++dl+ ls ++g
CP001150_1 243 EALIRLReElkldrEVRNLRDAVQGARDGAERVRDIVEDLRRLSSEGSG 291

-*

CP001150_1 - -

CP001150_1196: domain 1 of 1, from 374 to 439: score 57.4, E = 4.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+a++sH+L +PL+a ++++ ++ + ++ +e
CP001150_1 374 SRSRFVAAASHDLLQPLSAAKLFIATIGD---------EAVAPES-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l ++++++++ + ++ lLd+s++e+g
CP001150_1 410 ----------REALTKAQKALDSVEGILGALLDISKLESG 439

CP001150_1123: domain 1 of 1, from 122 to 186: score 56.0, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +l+HE+++PL++I+g+a+l+ + +ls+e+
CP001150_1 122 SAIGMAEMLAHEIKNPLAGISGAAQLIAM----------NLSAED-- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + i +e++r+ +L++++ ++ ++ +
CP001150_1 157 ----------RELADLIVEETRRIVKLLEQVEQFGNLRPP 186

CP001150_1542: domain 1 of 1, from 233 to 291: score 49.8, E = 7.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRTPLt +r+ +++L + +e+
CP001150_1 233 QRTLMLSGVSHDLRTPLTRLRLGLSMLSD-------------PEE-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +l ++ ++rL++++L + r +a
CP001150_1 265 -------------GEELLGDVADMERLVDEFLSFVRGDAL 291

CP001150_1786: domain 1 of 1, from 365 to 431: score 48.0, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl ++++ +++
CP001150_1 365 AIGQLAGGIAHDFNNLLTAISGHCDLLLL--------RHDREDPE-- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i++ a+r +L+ +lL +sr ++
CP001150_1 402 ----------FADLVQIHQNANRAASLVGQLLAFSRKQTL 431

CP001150_0905: domain 1 of 1, from 84 to 149: score 47.1, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fl+++sH+L +PL+a +++++ L e t + q
CP001150_0 84 SKSRFLRAASHDLLQPLSAAKLFLSHLSE---------TVSEPLQ-- 119

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i + ++ ++Li+ lL++sr+++
CP001150_0 120 ----------ADLVSRIGTAFDSTEELIRALLEISRLDSV 149

CP001150_1121: domain 1 of 1, from 501 to 572: score 46.8, E = 4.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ +l eq
CP001150_1 501 AWGDVARRIAHEIKNPLTPIQLSAERIKRKF-------RPLVGEQ-- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +y ++i+r+++ l+r+++++ ++r+ ++
CP001150_1 539 ------VGDLDQYSDVIIRQTNDLRRIVDEFSKFARMPEP 572

CP001150_2914: domain 1 of 1, from 194 to 260: score 44.2, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a+++HEL TPL++I++ ++ L e else+ +l
CP001150_2 194 DLGGVVAAAAHELGTPLATIKLVSSELAE----------ELSEQPAL 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e i+++a+r++++++ + + + +
CP001150_2 231 ----------RDDAELIREQADRCRDILRSMGRAGKDDLQ 260

CP001150_0440: domain 1 of 1, from 363 to 431: score 43.1, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a++sHEL++PL+a+++y+ ++ l ++ee
CP001150_0 363 ALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQ------RRRTEEA-- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i++ +er+ ++ ++l ++r + +
CP001150_0 402 ----------LASFQRIDDLIERMGAITRQLKSYARKGGE 431

CP001150_2281: domain 1 of 1, from 407 to 477: score 41.9, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI ya + + l++ + +++ +
CP001150_2 407 TLGEMASTLAHELNQPLAAIASYAAGAAN-----LLRQERADPALL- 447

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++ ++a+r ++i+++ dl r +++
CP001150_2 448 ----------SSALAKLSHQADRAGQIIRRIQDLVRKREP 477

CP001150_2450: domain 1 of 1, from 244 to 308: score 37.6, E = 2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a +sH+LR+ Lt+ +++a+ L + ++
CP001150_2 244 QLGGAVAKISHDLRNILTTAQLFADRLSA----------SDDPAV-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +++r +L + L++ r+e++
CP001150_2 279 ----------ARAAPKLVGSIRRAVSLCESTLTFGRAEEP 308

CP001150_1846: domain 1 of 1, from 537 to 601: score 35.1, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++l+H+L++ L+aI g a l++e l + +
CP001150_1 537 VIGQLASGLAHDLNNLLAAIGGSALLIRE-----------LQPGAA- 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++il ++e+ +L++++L+l + +++
CP001150_1 572 ----------EVHAQRILAATEQAGALVRRFLTLGKRQSN 601


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 10 0|=
-13 45 2|*====
-12 134 70|======*======
-11 277 367|========================== *
-10 481 681|============================================ *
-9 623 704|========================================================= *
-8 546 527|===============================================*==
-7 406 332|==============================*======
-6 227 191|=================*===
-5 142 104|=========*===
-4 82 56|=====*==
-3 45 29|==*==
-2 17 15|=*
-1 19 8|*=
0 11 4|*
1 5 2|*
2 2 1|*
3 2 0|=
4 1 0|=
5 0 0|
6 0 0|
> 7 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 218.4496
P(chi-square) = 2.056e-310

Total sequences searched: 3101

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: