Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

4 accessions found for Rhodobacter sphaeroides KD131  

Data for CP001150  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001150.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001150_2669 CDS_2714586-2712859 96.4 2.4e-27 1
CP001150_1486 CDS_1514712-1513660 93.1 2e-26 1
CP001150_2000 CDS_2034389-2035942 82.1 2.6e-23 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001150_2669 1/1 358 442 .. 1 94 [] 96.4 2.4e-27
CP001150_1486 1/1 155 238 .. 1 94 [] 93.1 2e-26
CP001150_2000 1/1 326 411 .. 1 94 [] 82.1 2.6e-23

Alignments of top-scoring domains:
CP001150_2669: domain 1 of 1, from 358 to 442: score 96.4, E = 2.4e-27
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+I+S+ ++Q r+++ +e+ + +++ q+RV+S
CP001150_2 358 EVHHRVKNNLQLIASIMNMQMRQARTPEA-----KGLMKGLQDRVMS 399

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
A+iH+ LY++ +l ++ +e l+ ++++ +++++ + +i +
CP001150_2 400 LATIHRGLYQTTGLTDIRADELLSDIVRQVVNLATGPGRRIA----V 442

CP001150_1486: domain 1 of 1, from 155 to 238: score 93.1, E = 2e-26
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRV N+L+++ SLLrLQa+ + +eev + aL E+q+R+ +
CP001150_1 155 EVHHRVANSLAMVQSLLRLQAQASGSEEV-----KTALAEAQGRIGA 196

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +H+ LY + + +v+++ Yl+ ++++ + g +klD+
CP001150_1 197 VAAVHRSLYLGNEGRQVELGTYLRTMLADFTATLPPG-----VKLDV 238

CP001150_2000: domain 1 of 1, from 326 to 411: score 82.1, E = 2.6e-23
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+ISSL+ LQ r +++++ +e + q+ + +
CP001150_2 326 EVHHRVKNNLQLISSLVALQRRGVQEPAM-----RERMARIQGQIGA 367

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +++ L++ + +tvdf++++ L++ + + g+++ ++++l
CP001150_2 368 IAKTYDLLHQFGASETVDFGPFVPALCAAIEGAEGGRAR---IEAEL 411


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 19 0|==
-14 28 0|==
-13 76 19|=*===
-12 206 203|============*
-11 930 567|===================================*=======================
-10 666 733|========================================== *
-9 423 619|=========================== *
-8 340 415|====================== *
-7 143 246|========= *
-6 156 137|========*=
-5 40 74|=== *
-4 29 39|==*
-3 14 20|=*
-2 9 10|*
-1 8 5|*
0 5 2|*
1 2 1|*
2 1 0|=
3 1 0|=
> 4 5 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 547.7887
P(chi-square) = 0

Total sequences searched: 3101

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: