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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

4 accessions found for Rhodobacter sphaeroides KD131  

Data for CP001151  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001151.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001151_0114 CDS_115777-118227 86.6 1e-24 1
CP001151_0299 CDS_308740-306641 77.5 4e-22 1
CP001151_0496 CDS_519020-520372 61.5 1.3e-17 1
CP001151_0317 CDS_329561-328167 53.1 3.1e-15 1
CP001151_0164 CDS_172397-171081 43.4 1.7e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001151_0114 1/1 314 379 .. 1 87 [] 86.6 1e-24
CP001151_0299 1/1 465 533 .. 1 87 [] 77.5 4e-22
CP001151_0496 1/1 230 295 .. 1 87 [] 61.5 1.3e-17
CP001151_0317 1/1 245 311 .. 1 87 [] 53.1 3.1e-15
CP001151_0164 1/1 226 290 .. 1 87 [] 43.4 1.7e-12

Alignments of top-scoring domains:
CP001151_0114: domain 1 of 1, from 314 to 379: score 86.6, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHE+RTP+++I g +elL+ +el + +
CP001151_0 314 AKTDFLATMSHEIRTPIHSIGGVTELLKQ---------SELASRD-- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ i+r++e l ++++d+Ld++rie+g
CP001151_0 350 ----------RGYVDAIERSTEVLASIVSDVLDYARIESG 379

CP001151_0299: domain 1 of 1, from 465 to 533: score 77.5, E = 4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+++sHELRTPLtaI+gyaelL++ +++ + + +r
CP001151_0 465 AKSNFLSSMSHELRTPLTAIIGYAELLET-------SEGRKLDGER- 503

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i ++ + +L++ +L+lsr+e+
CP001151_0 504 ----------LQQVQAISTAGWNMVKLVDAVLELSRLEHR 533

CP001151_0496: domain 1 of 1, from 230 to 295: score 61.5, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HEL+TPL+++++ ae++++ ++ +
CP001151_0 230 HEQDFTAYAAHELKTPLAGLKMQAEVARR---------APDAATR-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l i+r+++r +rL+ +lLd++ ++g
CP001151_0 266 ----------DHALAQIRRAVDRSDRLVHQLLDMAAVDQG 295

CP001151_0317: domain 1 of 1, from 245 to 311: score 53.1, E = 3.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ ++++H+LRTP+t +r+ +e L +++l+e+
CP001151_0 245 SLRQVSSDVAHDLRTPITRLRTSLEPLML--------REDLPEDA-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ +a+r+ r+ n +L +++ie g
CP001151_0 282 ----------AADIASAVGQADRIVRIFNAVLRIAQIEGG 311

CP001151_0164: domain 1 of 1, from 226 to 290: score 43.4, E = 1.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an++HELRTP++a ++ a+ L e++e
CP001151_0 226 AERGFTANAAHELRTPVAAALAQAQRLIV----------EAPEAL-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e++++e++rl rL lL+lsr+e
CP001151_0 261 ----------RPRAERLEQELKRLARLAAKLLELSRAEGA 290


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 2 0|=
-13 25 0|=======
-12 44 27|======*====
-11 128 145|================================ *
-10 192 269|================================================ *
-9 212 277|===================================================== *
-8 216 208|===================================================*==
-7 151 131|================================*=====
-6 98 75|==================*======
-5 78 41|==========*=========
-4 31 22|=====*==
-3 22 11|==*===
-2 11 6|=*=
-1 4 3|*
0 1 1|*
1 2 0|=
2 0 0|
> 3 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 107.7493
P(chi-square) = 1.516e-18

Total sequences searched: 1224

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: