Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

4 accessions found for Rhodobacter sphaeroides KD131  

Data for CP001151  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001151.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001151_0858 CDS_901918-900848 58.4 5.9e-17 1
CP001151_0304 CDS_314538-316163 36.3 1.2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001151_0858 1/1 149 231 .. 1 94 [] 58.4 5.9e-17
CP001151_0304 1/1 339 402 .. 1 73 [. 36.3 1.2e-10

Alignments of top-scoring domains:
CP001151_0858: domain 1 of 1, from 149 to 231: score 58.4, E = 5.9e-17
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRV NN ++ SLLrLQ r+ d+++ ++a +s+ R
CP001151_0 149 ELQHRVSNNIATLGSLLRLQERRLGDPKA-----RAAVADSRARLEV 190

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A ++++L+ + vd+++Y++ L+++ ++ + sd+is +
CP001151_0 191 VARLQRRLHDP-SRQFVDMGDYIRGLAGDTVAAM-DASDRIS----C 231

CP001151_0304: domain 1 of 1, from 339 to 402: score 36.3, E = 1.2e-10
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E HRVKNNL+++ +L++ Q r + e E ++R+++
CP001151_0 339 ELSHRVKNNLALVLALIDRQIRTRGGIEP---------LELRGRIMA 376

mAliHEeLYksedldtvdfseYlekL<-*
+A +H +L ++ ++df+ +e+L
CP001151_0 377 IAEVHSMLFAAGERYDLDFGRLIERL 402


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 8 0|==
-14 17 0|===
-13 35 7|=*====
-12 74 80|=============*
-11 332 223|=====================================*==================
-10 255 289|=========================================== *
-9 208 244|=================================== *
-8 140 164|======================== *
-7 55 97|========== *
-6 57 54|========*=
-5 21 29|====*
-4 7 15|==*
-3 5 8|=*
-2 1 4|*
-1 3 2|*
0 1 1|*
1 1 0|=
2 0 0|
3 0 0|
4 1 0|=
5 0 0|
6 0 0|
> 7 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 190.3061
P(chi-square) = 1.688e-35

Total sequences searched: 1224

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: