Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

4 accessions found for Rhodobacter sphaeroides KD131  

Data for CP001151  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001151.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001151_0202 CDS_210678-211994 31.3 1.8e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001151_0202 1/1 240 306 .. 1 70 [] 31.3 1.8e-09

Alignments of top-scoring domains:
CP001151_0202: domain 1 of 1, from 240 to 306: score 31.3, E = 1.8e-09
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
+RI +LHD+ +Q L+ ++l l+ +r + + + +ar++l+ +
CP001151_0 240 ALRRIGADLHDGPAQYLAFAALRLDDLREAQ--AGE--AARRELESV 282

relarealaevRrllgdLR.paal<-*
r+++ a++evR + ++L p++
CP001151_0 283 RDALAMAMEEVRGISRGLTlPDIA 306


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 4 0|=
-13 12 0|===
-12 19 13|===*=
-11 41 112|=========== *
-10 132 260|================================= *
-9 193 295|================================================= *
-8 169 227|=========================================== *
-7 194 143|===================================*=============
-6 132 81|====================*============
-5 133 43|==========*=======================
-4 78 22|=====*==============
-3 44 11|==*========
-2 23 5|=*====
-1 17 3|*====
0 12 1|*==
1 9 0|===
2 4 0|=
3 2 0|=
4 3 0|=
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 668.6241
P(chi-square) = 0

Total sequences searched: 1224

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: