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Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Laribacter hongkongensis HLHK9  

Data for CP001154  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001154.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001154_1011 CDS_979563-983180 103.0 6.1e-29 1
CP001154_0166 CDS_167092-168441 88.5 7.8e-25 1
CP001154_0105 CDS_103341-104483 78.1 6.7e-22 1
CP001154_1567 CDS_1522443-1525076 75.5 3.7e-21 1
CP001154_0226 CDS_221874-220492 62.5 1.8e-17 1
CP001154_1893 CDS_1811178-1812164 60.5 6.7e-17 1
CP001154_1801 CDS_1724096-1725412 60.2 8.1e-17 1
CP001154_0327 CDS_315475-314084 56.9 6.9e-16 1
CP001154_0556 CDS_526761-527945 53.7 5.6e-15 1
CP001154_0059 CDS_55232-53112 51.4 2.5e-14 1
CP001154_0885 CDS_856997-859165 50.6 4.3e-14 1
CP001154_2187 CDS_2088163-2086697 50.3 5.3e-14 1
CP001154_0201 CDS_193038-191725 49.6 8.1e-14 1
CP001154_1389 CDS_1343855-1346191 43.7 3.9e-12 1
CP001154_1132 CDS_1100149-1098140 39.5 6e-11 1
CP001154_1180 CDS_1143227-1145122 38.1 1.5e-10 1
CP001154_2262 CDS_2155985-2158225 37.9 1.7e-10 1
CP001154_1468 CDS_1430274-1428388 29.1 5.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001154_1011 1/1 563 628 .. 1 87 [] 103.0 6.1e-29
CP001154_0166 1/1 205 272 .. 1 87 [] 88.5 7.8e-25
CP001154_0105 1/1 1 59 [. 8 87 .] 78.1 6.7e-22
CP001154_1567 1/1 652 717 .. 1 87 [] 75.5 3.7e-21
CP001154_0226 1/1 238 302 .. 1 87 [] 62.5 1.8e-17
CP001154_1893 1/1 102 168 .. 1 87 [] 60.5 6.7e-17
CP001154_1801 1/1 223 288 .. 1 87 [] 60.2 8.1e-17
CP001154_0327 1/1 238 303 .. 1 87 [] 56.9 6.9e-16
CP001154_0556 1/1 174 238 .. 1 85 [. 53.7 5.6e-15
CP001154_0059 1/1 481 553 .. 1 87 [] 51.4 2.5e-14
CP001154_0885 1/1 474 541 .. 1 87 [] 50.6 4.3e-14
CP001154_2187 1/1 246 311 .. 1 87 [] 50.3 5.3e-14
CP001154_0201 1/1 211 277 .. 1 87 [] 49.6 8.1e-14
CP001154_1389 1/1 540 612 .. 1 87 [] 43.7 3.9e-12
CP001154_1132 1/1 434 504 .. 1 87 [] 39.5 6e-11
CP001154_1180 1/1 407 475 .. 1 87 [] 38.1 1.5e-10
CP001154_2262 1/1 508 578 .. 1 87 [] 37.9 1.7e-10
CP001154_1468 1/1 404 474 .. 1 87 [] 29.1 5.2e-08

Alignments of top-scoring domains:
CP001154_1011: domain 1 of 1, from 563 to 628: score 103.0, E = 6.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+++I+g++ l+l+ telseeq
CP001154_1 563 AKSDFLANMSHEIRTPMNGILGMTRLCLA---------TELSEEQ-- 598

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl+ ++++a+ ll ind+Ld+s+ieag
CP001154_1 599 ----------REYLDMVDSSAQLLLTVINDILDFSKIEAG 628

CP001154_0166: domain 1 of 1, from 205 to 272: score 88.5, E = 7.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+an+sHELRTPLt+I g++e+L + +++ +++l
CP001154_0 205 VHRDFVANVSHELRTPLTVIGGFVETLSD---------MDAPGPDIL 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l + ++a+r++ L++dlL+lsr+e+g
CP001154_0 243 ----------RQFLPLMMEQARRMQVLVEDLLTLSRLESG 272

CP001154_0105: domain 1 of 1, from 1 to 59: score 78.1, E = 6.7e-22
*->nlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRled
++sHE+RTP+++++g+a+lL t ls+eq
CP001154_0 1 MMSHEIRTPMNGVIGTADLLAQ---------TGLSAEQ--------- 29

peyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+++++ l Li+d+Ld+sri+ag
CP001154_0 30 ---LQYVNTIRECGQALTTLIDDILDFSRIDAG 59

CP001154_1567: domain 1 of 1, from 652 to 717: score 75.5, E = 3.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRTP+taI g+a +L++ +++ q
CP001154_1 652 MRNTLLSAVSHDLRTPITAIAGLAGTLEK---------KLADPAQ-- 687

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + i+ ea +++rL+++lLd++r+++g
CP001154_1 688 ----------QELAHAIHGEATQMNRLVSNLLDMARLQSG 717

CP001154_0226: domain 1 of 1, from 238 to 302: score 62.5, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a++sHELRTPL+++rg +e+L++++ +l++e
CP001154_0 238 LRRQLIADVSHELRTPLAVLRGEIEALEDGV-------RPLTPEA-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++ e+ l +L++dl ls ++ag
CP001154_0 276 -------------LGSLAGEVALLAKLVDDLHALSLADAG 302

CP001154_1893: domain 1 of 1, from 102 to 168: score 60.5, E = 6.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+++nl+HE+++PL +Irg+a+lL el++
CP001154_1 102 ANRELIRNLAHEIKNPLGGIRGAAQLLAL----------ELDDRP-- 136

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +eyle+i++ea rl++L+++lL + +
CP001154_1 137 --------ELAEYLEVIKHEALRLQHLVDRLLAPNQRHVQ 168

CP001154_1801: domain 1 of 1, from 223 to 288: score 60.2, E = 8.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ +++HELRTPL++++++++l+++ t++ +
CP001154_1 223 RERRFIGDAAHELRTPLAGMLAALDLAER---------TPREDVR-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++r++ rL+ +lL+l+r+++
CP001154_1 259 ----------TRALGNVRRAGLNATRLVAQLLELARLDHA 288

CP001154_0327: domain 1 of 1, from 238 to 303: score 56.9, E = 6.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HELRTPL+a+r ae++ + ++ r
CP001154_0 238 NERRFTADAAHELRTPLAALRVQAEVAML----------ASDDTAR- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l + ++r rL+++lL+l+r+++
CP001154_0 274 ----------RKALVQVMTGIDRATRLVEQLLTLARLDHL 303

CP001154_0556: domain 1 of 1, from 174 to 238: score 53.7, E = 5.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+LRTPL+a ++ya L e + l++ r
CP001154_0 174 AMGQMMAGLAHQLRTPLSAAMLYAANLSE---------PGLPASAR- 210

peLRledpeyreyletilreaerllrLindlLdlsrie<-*
+++ e+ l+ +++l+ +i+d L + r +
CP001154_0 211 ----------QRFAERTLERLRQLEGQIQDTLSYVRGD 238

CP001154_0059: domain 1 of 1, from 481 to 553: score 51.4, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+R+PLt I++ ae L ++l +++ +e +
CP001154_0 481 AWREVARRLAHEIRNPLTPIQLSAERLAMKL-------SPRLDEAGA 520

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L + ++ti++++ l +++ ++d++r+ ag
CP001154_0 521 DFL-------TRSTDTIIKQVAALKGMVDAFRDYARAPAG 553

CP001154_0885: domain 1 of 1, from 474 to 541: score 50.6, E = 4.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+lsHELRTP+++I ++++L +l +++s++ r
CP001154_0 474 EQRRFVAMLSHELRTPMAVIDSASQMLSLRL-----PASDRSSQSR- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i++e++rl +L ++ L r++++
CP001154_0 515 -------------LARIRQEVRRLTALCDNWLADDRLGQQ 541

CP001154_2187: domain 1 of 1, from 246 to 311: score 50.3, E = 5.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++se++ ++sH+LR PLt+++gy+el++ ++ ++
CP001154_2 246 QRSEMVTAVSHDLRSPLTGLLGYLELAEG---------EDDPARR-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl +++ ++ +++L +l +++ + +
CP001154_2 282 ----------NRYLAMARQKTDAMRDLATRLQEYASLADP 311

CP001154_0201: domain 1 of 1, from 211 to 277: score 49.6, E = 8.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ ++sH+LRTP++ +r +e+L+ +e ++ +
CP001154_0 211 SRKVMINAVSHDLRTPIARLRYRLEMLKG--------LSEDNPMT-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i re+++l+++ ++lL l +e +
CP001154_0 248 ----------DKVIGQINRELDQLNDMTDELLLLGSLERQ 277

CP001154_1389: domain 1 of 1, from 540 to 612: score 43.7, E = 3.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI +ya +++++l + +++ q
CP001154_1 540 TMGEMASTLAHELNQPLAAIATYAAACERRL-------QSAGAVQ-- 577

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +r le+i ++a+r ++i ++ + + ++
CP001154_1 578 -----DIGQIRVPLERIASQARRAGAIIHGIRGFVKKHSP 612

CP001154_1132: domain 1 of 1, from 434 to 504: score 39.5, E = 6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla++sHELRTPL++I +a+ L + d + +++ +
CP001154_1 434 QQQQFLATVSHELRTPLSVIDSAAQNLVLGTD------MTSTADAQT 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++il++++rl L++d L r + +
CP001154_1 475 ----------RRRYQKILNASQRLTLLLQDALSEPRFDLQ 504

CP001154_1180: domain 1 of 1, from 407 to 475: score 38.1, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l HEL++PL+a+ +++ ++ l + +++
CP001154_1 407 ALGQMAAGLTHELNQPLAALTTLSANARV-----------LLARDQI 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ re l+ i++ a+r+ ++i +l ++r
CP001154_1 443 GEA-------RENLDLIEQTAQRMGQIITQLKAFARKAPA 475

CP001154_2262: domain 1 of 1, from 508 to 578: score 37.9, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y +++l+ +++++ ++ +l
CP001154_2 508 TMGEMASGIAHELNQPLAAIVNYNQACLR------LIEEDEPDFPTL 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ +a+r +++ +l+ + +
CP001154_2 549 ----------RHALSATATQAQRAGEILKRLRAFVARQPI 578

CP001154_1468: domain 1 of 1, from 404 to 474: score 29.1, E = 5.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e + l+HE+++PLtaI ya + ++++ + + + +
CP001154_1 404 LLGEISSQLAHEINQPLTAIGNYARGMVRRVE-----NGRMEAGSL- 444

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + i +aer ++++++++++r +
CP001154_1 445 ----------IEAGHEITAQAERAAAIVQRVRTFARKRVS 474


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 6 0|=
-14 38 0|====
-13 105 2|*==========
-12 199 74|=======*============
-11 318 383|================================ *
-10 477 712|================================================ *
-9 564 735|========================================================= *
-8 523 550|===================================================== *
-7 373 346|==================================*===
-6 248 199|===================*=====
-5 154 109|==========*=====
-4 101 58|=====*=====
-3 58 30|==*===
-2 20 16|=*
-1 13 8|*=
0 11 4|*=
1 6 2|*
2 2 1|*
> 3 22 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 430.4853
P(chi-square) = 0

Total sequences searched: 3238

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: