Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Azotobacter vinelandii DJ  

Data for CP001157  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001157.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001157_3969 CDS_4138136-4139512 65.7 5.5e-19 1
CP001157_1679 CDS_1718782-1717712 60.9 1.5e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001157_3969 1/1 249 316 .. 1 70 [] 65.7 5.5e-19
CP001157_1679 1/1 159 223 .. 2 70 .] 60.9 1.5e-17

Alignments of top-scoring domains:
CP001157_3969: domain 1 of 1, from 249 to 316: score 65.7, E = 5.5e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER R +RELHD+++Q L +ik q ela ++l ++ + l ++
CP001157_3 249 ERSRVSRELHDGISQLLVSIKFQFELAGHQL--EAGHSGGLAILGQA 293

relarealaevRrllgdLRpaal<-*
e + a+ e+Rr+ +dLRp+ l
CP001157_3 294 TERLGGAIGEIRRISHDLRPSLL 316

CP001157_1679: domain 1 of 1, from 159 to 223: score 60.9, E = 1.5e-17
*->RaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeir
RaRIARE+HD++g L++ikl + ++++ ++d++e e ++ i
CP001157_1 159 RARIAREIHDVLGGVLTSIKLDTNRLKQ----RADNPETLEIIESIL 201

elarealaevRrllgdLRpaal<-*
+l++e+++ vR++ +L pa+l
CP001157_1 202 GLSQEGIDMVREISEQLYPAVL 223


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 3 0|=
-14 59 0|=====
-13 108 0|========
-12 121 56|===*=====
-11 181 462|============= *
-10 488 1074|=================================== *
-9 800 1219|==========================================================*
-8 696 940|================================================== *
-7 654 591|==========================================*====
-6 618 334|=======================*=====================
-5 536 179|============*==========================
-4 286 93|======*==============
-3 157 48|===*========
-2 119 24|=*=======
-1 86 12|*======
0 37 6|*==
1 51 3|*===
2 18 1|*=
3 13 0|=
4 8 0|=
5 4 0|=
6 2 0|=
> 7 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 3309.9319
P(chi-square) = 0

Total sequences searched: 5051

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: