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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Acinetobacter baumannii AB307-0294  

Data for CP001172  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001172.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001172_2928 CDS_3171872-3174679 93.7 2.8e-26 1
CP001172_2052 CDS_2229650-2226186 77.8 9.2e-22 1
CP001172_0103 CDS_118346-116988 72.2 3.4e-20 1
CP001172_1288 CDS_1427587-1430241 68.5 3.8e-19 1
CP001172_1120 CDS_1260041-1261399 62.1 2.5e-17 1
CP001172_2814 CDS_3041550-3039958 61.6 3.4e-17 1
CP001172_3230 CDS_3508599-3510122 59.9 1e-16 1
CP001172_1211 CDS_1347481-1348884 58.8 2.1e-16 1
CP001172_0559 CDS_606699-608255 56.7 8.4e-16 1
CP001172_1429 CDS_1586425-1585316 56.2 1.2e-15 1
CP001172_0177 CDS_204195-200698 53.0 9.8e-15 1
CP001172_0693 CDS_750211-751545 50.5 4.8e-14 1
CP001172_1219 CDS_1355848-1357128 50.4 5.2e-14 1
CP001172_0279 CDS_304104-302761 47.0 4.8e-13 1
CP001172_0536 CDS_579935-581203 41.8 1.5e-11 1
CP001172_1665 CDS_1827968-1826883 41.6 1.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001172_2928 1/1 289 355 .. 1 87 [] 93.7 2.8e-26
CP001172_2052 1/1 683 749 .. 1 87 [] 77.8 9.2e-22
CP001172_0103 1/1 224 290 .. 1 87 [] 72.2 3.4e-20
CP001172_1288 1/1 656 724 .. 1 87 [] 68.5 3.8e-19
CP001172_1120 1/1 224 290 .. 1 87 [] 62.1 2.5e-17
CP001172_2814 1/1 295 360 .. 1 87 [] 61.6 3.4e-17
CP001172_3230 1/1 298 362 .. 1 87 [] 59.9 1e-16
CP001172_1211 1/1 236 302 .. 1 87 [] 58.8 2.1e-16
CP001172_0559 1/1 298 362 .. 1 87 [] 56.7 8.4e-16
CP001172_1429 1/1 137 194 .. 1 79 [. 56.2 1.2e-15
CP001172_0177 1/1 804 869 .. 1 87 [] 53.0 9.8e-15
CP001172_0693 1/1 218 280 .. 1 87 [] 50.5 4.8e-14
CP001172_1219 1/1 206 268 .. 1 87 [] 50.4 5.2e-14
CP001172_0279 1/1 222 280 .. 1 87 [] 47.0 4.8e-13
CP001172_0536 1/1 177 245 .. 1 87 [] 41.8 1.5e-11
CP001172_1665 1/1 139 203 .. 1 87 [] 41.6 1.6e-11

Alignments of top-scoring domains:
CP001172_2928: domain 1 of 1, from 289 to 355: score 93.7, E = 2.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I g+++lLl+ ++ls eq
CP001172_2 289 AKSVFLANISHELRTPLNSIDGFIHLLLR--------QQNLSNEQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ti++++ +ll+Lind+Ld+s+i+ag
CP001172_2 326 ----------NLYLQTIRKSSAHLLALINDVLDFSKIDAG 355

CP001172_2052: domain 1 of 1, from 683 to 749: score 77.8, E = 9.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++I+gy++lL++ +e+ +eq
CP001172_2 683 AKSRYVIGISHELRTPLNSILGYSQLLQK---------QEQLSEQG- 719

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +i r++++l +Li+ lLdl+rie+g
CP001172_2 720 ----------KMALGVISRSGQHLTSLIDGLLDLARIETG 749

CP001172_0103: domain 1 of 1, from 224 to 290: score 72.2, E = 3.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ n+sHELRTPLt+++gy+e+ + ++ ++
CP001172_0 224 MRKDFVDNISHELRTPLTVLSGYIETFTD--------QEDINPRW-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ ++++++r+++L+ndlL ls +e++
CP001172_0 261 ----------KRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

CP001172_1288: domain 1 of 1, from 656 to 724: score 68.5, E = 3.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++I+g+a++L + +e++e+++
CP001172_1 656 LRSALLSSVSHDLRSPLASIIGAADTLAN-------FKAEMTEQDQ- 694

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++leti+ e+erl+r i++lLd++r++++
CP001172_1 695 ----------QDLLETIHLEGERLDRYIQNLLDMTRLGHE 724

CP001172_1120: domain 1 of 1, from 224 to 290: score 62.1, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHELR PL+aI++ +++L++++ ++ +e +
CP001172_1 224 AEQRFTADASHELRSPLSAIQMRLQVLQRKY-------QHIPELD-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i++++ r +++++lL l+r+e +
CP001172_1 262 -----------HDFERIQEDVSRSTKILENLLLLARLEPN 290

CP001172_2814: domain 1 of 1, from 295 to 360: score 61.6, E = 3.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+++++sHELRTP++ Ir+ +e+L e e + +r
CP001172_2 295 AQRELMRAVSHELRTPVARIRFGTEMLAE----------EDDYNHR- 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i++++e l+ Li+++++++++e+g
CP001172_2 331 ----------MHQVDMIDKDIEALNTLIDEIMTYAKLEQG 360

CP001172_3230: domain 1 of 1, from 298 to 362: score 59.9, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+R+PL+aI + elL++ +e+q
CP001172_3 298 ALGQLSASIAHEIRNPLAAIVQANELLKD----------SDPEQQ-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i ++++r++++++d L l+r e
CP001172_3 333 ----------NTLRHIIGKQTKRIDSIVQDTLGLARSERT 362

CP001172_1211: domain 1 of 1, from 236 to 302: score 58.8, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f +++HE+RTPL+ ++g +e++l+ +e+s eq
CP001172_1 236 QLNRFSEDIAHEFRTPLNNLIGQTEIALT---------GERSVEQ-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l + l++ +rl r+i+ +L l+r+++
CP001172_1 272 ---------YEDLLVSHLDDYHRLKRMIDSMLFLARADQK 302

CP001172_0559: domain 1 of 1, from 298 to 362: score 56.7, E = 8.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+ sHEL+TPL+++++ +e+++++ ++++e+
CP001172_0 298 SRRQWVADTSHELKTPLAVLQAQIEAMQDGI-------RKATPEH-- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + r++ +l +L +dl dl++++a+
CP001172_0 336 -------------LDAMMRQVSSLKKLTQDLADLAQADAQ 362

CP001172_1429: domain 1 of 1, from 137 to 194: score 56.2, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++HE+++PL++Irg+++lL + l++e
CP001172_1 137 VARQLVRGVAHEIKNPLAGIRGATQLLAR----------SLNDES-- 171

peLRledpeyreyletilreaerllrLindlL<-*
y+e++++i++e++rl +L + +L
CP001172_1 172 ---------YAEFTDIIINEVDRLTNLADTML 194

CP001172_0177: domain 1 of 1, from 804 to 869: score 53.0, E = 9.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a++sH+L +P++a r+++ +L+ + +ee+
CP001172_0 804 SKSRFIAAASHDLLQPMHAARLFSTVLEQ---------SISTEED-- 839

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ ++r++ +++++ lLd++r+e g
CP001172_0 840 ----------RQTLQQLDRALYGAESMLSALLDIARLEGG 869

CP001172_0693: domain 1 of 1, from 218 to 280: score 50.5, E = 4.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++HELRTP+ta+ + +++Ll ++ +e+
CP001172_0 218 EQKQFIADAAHELRTPVTALNLQTKILLSQF-----------PEH-- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ + + + r+++L+ +lL l++ +
CP001172_0 252 -----------ESLQNLSKGLARIQHLVTQLLALAKQDVT 280

CP001172_1219: domain 1 of 1, from 206 to 268: score 50.4, E = 5.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef+ ++sHELRTPLt ++g+++l+++++ ++
CP001172_1 206 REREFTGDVSHELRTPLTILKGNVQLCQAKF-------GD------- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++ +e ++ L++ lL ++r
CP001172_1 239 ----------DKSLVRLHNTIEDMQLLVDTLLAIARNTVK 268

CP001172_0279: domain 1 of 1, from 222 to 280: score 47.0, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt Ir++ae+L +
CP001172_0 222 ERRIMLAGISHDLRTPLTRIRLTAEMLPD------------------ 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e + +++ +++++n++ + r ++
CP001172_0 251 ----------EFLREGLVYDVDDMDAILNQFISYMRDGSD 280

CP001172_0536: domain 1 of 1, from 177 to 245: score 41.8, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ +sH+LR P ++++g++e+L + ++++l+e +
CP001172_0 177 SKTKFFSIISHDLRAPFHGLLGFSEVLAK-------ERETLDESSI- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ +++ +L++ lL+ + +e g
CP001172_0 216 ----------QNIADYLYDTSQSTYNLLESLLTWAMAEGG 245

CP001172_1665: domain 1 of 1, from 139 to 203: score 41.6, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a+++HELRTP+t ++g ++ + ++++ ++
CP001172_1 139 NAQVWNAAIAHELRTPITILQGRLQGIIDGVF----------KPD-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++l+++e l++L++dl++ls e++
CP001172_1 174 ----------EVLFKSLLNQVEGLSHLVEDLRTLSLVENQ 203


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 2 0|=
-14 17 0|==
-13 72 2|*=====
-12 193 79|======*==========
-11 360 409|============================== *
-10 613 760|==================================================== *
-9 665 785|======================================================== *
-8 552 587|============================================== *
-7 375 370|==============================*=
-6 260 213|=================*====
-5 152 116|=========*===
-4 86 62|=====*==
-3 37 33|==*=
-2 25 17|=*=
-1 19 9|*=
0 4 4|*
1 2 2|*
2 2 1|*
3 2 0|=
4 2 0|=
5 1 0|=
> 6 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 263.8665
P(chi-square) = 0

Total sequences searched: 3458

Whole sequence top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: