Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Thermosipho africanus TCF52B  

Data for CP001185  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001185.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001185_0135 CDS_128195-129469 99.3 4e-28 1
CP001185_1708 CDS_1778899-1777502 96.3 2.8e-27 1
CP001185_0536 CDS_567019-565823 66.6 7.4e-19 1
CP001185_0555 CDS_581890-584517 56.3 6.2e-16 1
CP001185_0118 CDS_114212-113262 41.3 1.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001185_0135 1/1 188 255 .. 1 87 [] 99.3 4e-28
CP001185_1708 1/1 240 306 .. 1 87 [] 96.3 2.8e-27
CP001185_0536 1/1 197 264 .. 1 87 [] 66.6 7.4e-19
CP001185_0555 1/1 657 723 .. 1 87 [] 56.3 6.2e-16
CP001185_0118 1/1 102 169 .. 1 87 [] 41.3 1.1e-11

Alignments of top-scoring domains:
CP001185_0135: domain 1 of 1, from 188 to 255: score 99.3, E = 4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef++n+sHELRTPLt+I gyae+Lle ++l ++++
CP001185_0 188 VRKEFISNVSHELRTPLTSIHGYAEALLE---------DDLEDKEL- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r++l++i++ea r+ rLindlLdl+++e+g
CP001185_0 225 ---------IRKFLSIIESEAARMTRLINDLLDLEKLESG 255

CP001185_1708: domain 1 of 1, from 240 to 306: score 96.3, E = 2.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+an+sHELRTPLtaI++y+e+Ll+ e + e +
CP001185_1 240 MKTEFVANISHELRTPLTAIKAYTETLLN---------MEVDRESQ- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+let+++++erl++L+ndlLd++ ie+g
CP001185_1 277 ----------REFLETVYEQSERLESLLNDLLDFTLIESG 306

CP001185_0536: domain 1 of 1, from 197 to 264: score 66.6, E = 7.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef++n+sHEL+TP++ ++gy+++L++ +++++e+ +
CP001185_0 197 LQEEFVSNVSHELKTPIANLIGYSKMLER--------WGHKDEQIL- 234

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i + ++ + +L++++ ls+ +
CP001185_0 235 ----------KEAIDSIAQTSKKMKDLVENMILLSKNLEL 264

CP001185_0555: domain 1 of 1, from 657 to 723: score 56.3, E = 6.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a + HELR+P++++ g+++ L++ +++ +
CP001185_0 657 ALGEMAARVVHELRNPISVLGGFVKRLEK--------YANDENKR-- 693

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl++i +e+ rl+++++++L++sr
CP001185_0 694 ----------SKYLKIISDEIVRLESIVSEILEFSRDKKI 723

CP001185_0118: domain 1 of 1, from 102 to 169: score 41.3, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak f+ ++sHEL +PL+ I++++ L++ + + +++
CP001185_0 102 AKVNFTTAISHELFNPLSIIKANTIYLKD--------TLNENNKDI- 139

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+le i+++++r++r+i +l l+ +e g
CP001185_0 140 ----------LEALEDIEKSSNRMERIIKQLKVLAMLELG 169


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 2 0|=
-14 9 0|==
-13 36 1|*=====
-12 109 43|======*=========
-11 235 226|================================*=
-10 348 420|================================================== *
-9 362 434|==================================================== *
-8 299 325|=========================================== *
-7 198 204|=============================*
-6 114 117|================*
-5 79 64|=========*==
-4 42 34|====*=
-3 25 18|==*=
-2 22 9|=*==
-1 14 5|*=
0 8 2|*=
1 4 1|*
> 2 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 164.1714
P(chi-square) = 1.863e-29

Total sequences searched: 1913

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: