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2 accessions found for Gluconacetobacter diazotrophicus PAl 5  

Data for CP001189  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001189.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001189_2625 CDS_2957153-2958361 73.6 1.4e-20 1
CP001189_1934 CDS_2192729-2194507 69.4 2.2e-19 1
CP001189_2163 CDS_2448067-2446682 60.8 5.9e-17 1
CP001189_2274 CDS_2573709-2572519 57.1 6.5e-16 1
CP001189_0480 CDS_534931-533822 56.4 1e-15 1
CP001189_0478 CDS_532292-530028 49.5 9.4e-14 1
CP001189_3213 CDS_3594618-3596021 44.2 2.9e-12 1
CP001189_3009 CDS_3372260-3374176 39.4 6.9e-11 1
CP001189_1315 CDS_1493271-1491829 34.4 1.8e-09 1
CP001189_2050 CDS_2322849-2324240 32.9 4.8e-09 1
CP001189_2112 CDS_2386192-2384645 32.1 7.8e-09 1
CP001189_2880 CDS_3230077-3231480 31.5 1.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001189_2625 1/1 158 225 .. 1 87 [] 73.6 1.4e-20
CP001189_1934 1/1 360 425 .. 1 87 [] 69.4 2.2e-19
CP001189_2163 1/1 236 301 .. 1 87 [] 60.8 5.9e-17
CP001189_2274 1/1 172 235 .. 1 87 [] 57.1 6.5e-16
CP001189_0480 1/1 137 201 .. 1 87 [] 56.4 1e-15
CP001189_0478 1/1 518 589 .. 1 87 [] 49.5 9.4e-14
CP001189_3213 1/1 260 327 .. 1 87 [] 44.2 2.9e-12
CP001189_3009 1/1 262 329 .. 1 87 [] 39.4 6.9e-11
CP001189_1315 1/1 242 308 .. 1 87 [] 34.4 1.8e-09
CP001189_2050 1/1 244 302 .. 1 87 [] 32.9 4.8e-09
CP001189_2112 1/1 246 312 .. 1 87 [] 32.1 7.8e-09
CP001189_2880 1/1 232 298 .. 1 87 [] 31.5 1.2e-08

Alignments of top-scoring domains:
CP001189_2625: domain 1 of 1, from 158 to 225: score 73.6, E = 1.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+a+ g++e+L+ ++ ++ q
CP001189_2 158 MRTDFVAYASHELRTPLAALTGFIETLRG-------PAADDPPAQ-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +a r++rL+++lL lsr +
CP001189_2 196 ----------QRFLGVMAGQAARMQRLLDRLLMLSRVQMS 225

CP001189_1934: domain 1 of 1, from 360 to 425: score 69.4, E = 2.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHE+++PL++Ir ++e+L + e q
CP001189_1 360 AIERFAADVSHEIKNPLSSIRSAIETLVR---------IEDLNRQ-- 395

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i ++++rl+rLi d+ d sr +a+
CP001189_1 396 ----------RRLLSIINDDVRRLDRLITDISDASRVDAE 425

CP001189_2163: domain 1 of 1, from 236 to 301: score 60.8, E = 5.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+an++HELR+P+ a++g a++L+e+l +e ++ r
CP001189_2 236 SERAFAANAAHELRNPIGALLGQAQMLREQL-------HEPEAPAR- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++rl r+ + lL+lsr+ +g
CP001189_2 275 -------------AAAMIAQIRRLGRMTEKLLQLSRASSG 301

CP001189_2274: domain 1 of 1, from 172 to 235: score 57.1, E = 6.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LR+PL +I + +Ll++ +e +
CP001189_2 172 LREQFIAVLGHDLRNPLMSIESGTRMLLRY------------PERA- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i++++ r+ +Lindl+d++r + g
CP001189_2 206 ----------AELVPHIQKSTARMGALINDLMDFARGRLG 235

CP001189_0480: domain 1 of 1, from 137 to 201: score 56.4, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s ++a l+HE ++PL++Irg+a+lL+ e +
CP001189_0 137 SVSGMAAILAHEVKNPLSGIRGAAQLLES----------SVAEGD-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ i++ea+r+++L++++ +s +
CP001189_0 172 ----------RELAVLIRDEADRIRDLVERMEMFSDKPLE 201

CP001189_0478: domain 1 of 1, from 518 to 589: score 49.5, E = 9.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I+++ae L++++ +++ + ++e+
CP001189_0 518 AWADVARRIAHEIKNPLTPIQLAAERLKRRF----LREITSDPET-- 558

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +ti r + + r+++++ ++r+ ++
CP001189_0 559 ---------FSQCADTIVRHVGDIGRMVDEFSAFARMPQP 589

CP001189_3213: domain 1 of 1, from 260 to 327: score 44.2, E = 2.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ la++sH+LRTPLt +r+ + ++ ++ ++e +
CP001189_3 260 QRTAVLAGVSHDLRTPLTRLRLSLAMIPH--------QGAIDAEML- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++ ++ ++r+i+ L ++r e
CP001189_3 298 ----------RADVADMIGDIAEMERMIESYLSFARGEGA 327

CP001189_3009: domain 1 of 1, from 262 to 329: score 39.4, E = 6.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ Lta++g +el+ + + + l+e +
CP001189_3 262 ALGTMAGGIAHDFNNLLTAVMGSLELATDMA-------DGLDERT-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ + +a+r +L ++lL +sr +
CP001189_3 300 ----------AHLLDNAMAAARRGAELTRRLLNFSRPRDL 329

CP001189_1315: domain 1 of 1, from 242 to 308: score 34.4, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++R PL+ +r +e++ ++ +++
CP001189_1 242 SLQQVSNDIAHDMRRPLSRLRQRLEAASV---------ADHTPDA-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r +e + +++++ l++ + lL ls+iea
CP001189_1 278 ---------FRATIEDAVEDLDSALEIFSSLLRLSQIEAA 308

CP001189_2050: domain 1 of 1, from 244 to 302: score 32.9, E = 4.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e la++sH+LRTPL+ +r+ a L +
CP001189_2 244 DRTEALAAVSHDLRTPLARLRLRAGFLDD------------------ 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i++++ +++++ +L + e+
CP001189_2 273 ----------PEVQGAIESDVAEMEAMVGGVLAYLSGEND 302

CP001189_2112: domain 1 of 1, from 246 to 312: score 32.1, E = 7.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++H+LRTP+t r+ +e + e ++ +e ++
CP001189_2 246 GVRQVSNSIAHDLRTPITRARTQLEDAAE---------HASGEGEL- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++++ ++ + + lL +++ieag
CP001189_2 283 ----------RAAIDRAVGHLDNVTAVFEALLRIAQIEAG 312

CP001189_2880: domain 1 of 1, from 232 to 298: score 31.5, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H+LRTPL+ +r+ ++ +l + ++ +
CP001189_2 232 EIRDVGNDIAHDLRTPLARVRARLDRALS---------GQVDALAL- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++++++++ i lL l+ ie+g
CP001189_2 269 ----------KDVIARAIDDLDQSFLVITALLRLAEIENG 298


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 9 0|=
-13 41 2|*===
-12 152 79|======*======
-11 293 411|========================= *
-10 523 763|============================================ *
-9 693 788|==========================================================*
-8 603 590|=================================================*=
-7 489 372|==============================*==========
-6 300 214|=================*=======
-5 172 117|=========*=====
-4 85 62|=====*==
-3 44 33|==*=
-2 26 17|=*=
-1 12 9|*
0 7 4|*
> 1 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 301.2639
P(chi-square) = 0

Total sequences searched: 3472

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: