Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

2 accessions found for Gluconacetobacter diazotrophicus PAl 5  

Data for CP001189  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001189.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001189_3446 CDS_3855171-3856982 110.6 2.3e-31 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001189_3446 1/1 397 480 .. 1 94 [] 110.6 2.3e-31

Alignments of top-scoring domains:
CP001189_3446: domain 1 of 1, from 397 to 480: score 110.6, E = 2.3e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+++SLL+LQ +++ +e+ +e + +++RV++
CP001189_3 397 EVHHRVKNNLQIVASLLNLQVSRIRQPEA-----REEFAQARDRVRA 438

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
A++H++LY ++l ++ + + ++L++++fq++g ++dg +
CP001189_3 439 LATLHRYLYAEGELFSLSMEHFATELCGQIFQAAGEDRDGR-----I 480


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 8 0|=
-14 23 0|==
-13 58 21|=*==
-12 202 228|============ *
-11 960 635|=====================================*===================
-10 827 821|================================================*
-9 496 694|============================== *
-8 411 465|========================= *
-7 199 276|============ *
-6 176 154|=========*=
-5 43 82|=== *
-4 36 43|==*
-3 11 23|=*
-2 8 12|*
-1 8 6|*
0 2 3|*
1 1 1|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 346.4442
P(chi-square) = 0

Total sequences searched: 3472

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: