Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

2 accessions found for Gluconacetobacter diazotrophicus PAl 5  

Data for CP001189  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001189.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001189_1865 CDS_2120956-2122062 61.0 9.3e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001189_1865 1/1 180 239 .. 1 62 [. 61.0 9.3e-18

Alignments of top-scoring domains:
CP001189_1865: domain 1 of 1, from 180 to 239: score 61.0, E = 9.3e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIAR+LHD++g +L++ +l+++la+rl+ ++d+e+a+++++++
CP001189_1 180 ERERIARDLHDVIGRALTLTALKADLAARLA--PRDAEAAEAEMRAV 224

relarealaevRrll<-*
++lare+lae+R++l
CP001189_1 225 AALAREGLAEIRAAL 239


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 1 0|=
-14 8 0|=
-13 24 0|===
-12 66 38|===*===
-11 104 318|=========== *
-10 343 738|=================================== *
-9 565 838|========================================================= *
-8 534 646|====================================================== *
-7 507 406|========================================*==========
-6 392 229|======================*=================
-5 353 123|============*=======================
-4 222 64|======*================
-3 123 33|===*=========
-2 87 16|=*=======
-1 55 8|*=====
0 37 4|*===
1 20 2|*=
2 13 1|*=
3 5 0|=
4 4 0|=
5 4 0|=
6 1 0|=
7 1 0|=
8 0 0|
9 1 0|=
10 0 0|
> 11 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2220.7014
P(chi-square) = 0

Total sequences searched: 3472

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: