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Classification of phyla is from NCBI page
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5 accessions found for Rhizobium leguminosarum bv. trifolii WSM2304  

Data for CP001192  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001192.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001192_0945 CDS_1029262-1035561 78.6 1.8e-22 1
CP001192_0002 CDS_814-2103 58.7 7.6e-17 1
CP001192_0212 CDS_219753-220760 56.8 2.7e-16 1
CP001192_0892 CDS_965804-967201 56.4 3.4e-16 1
CP001192_0751 CDS_810049-811761 47.0 1.6e-13 1
CP001192_1009 CDS_1105914-1102279 39.6 2e-11 1
CP001192_0946 CDS_1035572-1037248 34.9 4.2e-10 1
CP001192_0774 CDS_837795-839978 33.0 1.5e-09 1
CP001192_0729 CDS_789081-790991 31.4 4.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001192_0945 1/1 1424 1492 .. 1 87 [] 78.6 1.8e-22
CP001192_0002 1/1 200 263 .. 1 87 [] 58.7 7.6e-17
CP001192_0212 1/1 125 195 .. 1 87 [] 56.8 2.7e-16
CP001192_0892 1/1 247 312 .. 1 87 [] 56.4 3.4e-16
CP001192_0751 1/1 354 419 .. 1 87 [] 47.0 1.6e-13
CP001192_1009 1/1 988 1058 .. 1 87 [] 39.6 2e-11
CP001192_0946 1/1 189 255 .. 1 87 [] 34.9 4.2e-10
CP001192_0774 1/1 356 423 .. 1 87 [] 33.0 1.5e-09
CP001192_0729 1/1 406 476 .. 1 87 [] 31.4 4.3e-09

Alignments of top-scoring domains:
CP001192_0945: domain 1 of 1, from 1424 to 1492: score 78.6, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ + + L e d++ls +q
CP001192_0 1424 YKSEFLANMSHELRTPLNSILILGQQLGE------NPDGNLSGKQ-- 1462

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti+ ++ ll+Li+d+Ldls+ie+g
CP001192_0 1463 ----------VEFAKTIHGAGTDLLNLISDILDLSKIESG 1492

CP001192_0002: domain 1 of 1, from 200 to 263: score 58.7, E = 7.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELR PL+ +++++ +L+ s+ ++
CP001192_0 200 AQQRLFHDVSHELRSPLSRLQAAVGVLRQ------------SPAKL- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++++re+erl+ L+ ++L+l+r+ ag
CP001192_0 234 ----------GAMLDRMDREVERLDTLVGEVLTLARLTAG 263

CP001192_0212: domain 1 of 1, from 125 to 195: score 56.8, E = 2.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a++sHEL+ PLtaIrg+aelL++ + e +
CP001192_0 125 YVGSFAAHVSHELKSPLTAIRGAAELLRD----------DDAERPMT 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ R +l+ i +a rl+ L+++l++l+++e++
CP001192_0 162 KAQR------LHFLDNIVADAARLDVLLQRLRELAQAETP 195

CP001192_0892: domain 1 of 1, from 247 to 312: score 56.4, E = 3.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n++H+LRTPL+ I++ a+++ + e ++ r
CP001192_0 247 AQRRFVSNAAHQLRTPLALISTQASVAAR----------EGDAVRR- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ ++++++rL ++lL+lsr+e g
CP001192_0 283 ----------DEALLALRTSTRHISRLASQLLTLSRAEPG 312

CP001192_0751: domain 1 of 1, from 354 to 419: score 47.0, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LR PL+a+ + ++ Ll+e+ +t++s+
CP001192_0 354 LREQFIAVLGHDLRDPLAALDAGTSRLLKEG------WTARSPLV-- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++ ++ r+ L+++++dl+r++ g
CP001192_0 393 -------------LNLMKASISRMTGLVDNIMDLARARLG 419

CP001192_1009: domain 1 of 1, from 988 to 1058: score 39.6, E = 2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e+ a+++HE ++PL+a+ +++++++++l +e + +r+
CP001192_1 988 SLAELSASIAHEVNQPLAAVVANSHACQRWLM------AEPPNMERA 1028

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+r+a++ + +++++ l + a
CP001192_1 1029 ----------QRTVERIIRDANSAADVVSRIRALFKQSAD 1058

CP001192_0946: domain 1 of 1, from 189 to 255: score 34.9, E = 4.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ L a++g + lL++ + +++e
CP001192_0 189 TIGHLTGGVAHDFNNLLMAVLGSLGLLKK--------RLPADERS-- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++++aer +L ++lL ++r ++
CP001192_0 226 ----------ERLLTNAIQAAERGTALTQRLLAFARRQEL 255

CP001192_0774: domain 1 of 1, from 356 to 423: score 33.0, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L I g++++Ll+ +l++e
CP001192_0 356 AVGQLTGGVAHDFNNLLQIIVGNLDTLLR----------TLPAEA-- 390

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L r++ + + aer +L ++lL ++r +
CP001192_0 391 TRL-------RRAASQAMGGAERAAALTQRLLAFARRQPL 423

CP001192_0729: domain 1 of 1, from 406 to 476: score 31.4, E = 4.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ +++HE ++PL aI ++a ++l++l + ++ + eq+
CP001192_0 406 ATGELAVSIAHEVNQPLMAIVTNAGTCLRWL-----QPGHTDIEQA- 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e+i ++++r ++i ++ +++
CP001192_0 447 ----------RLAAERIVKDGHRAGDIIASIRAMAQKSPA 476


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 4 0|=
-13 11 0|===
-12 32 26|======*=
-11 104 137|========================== *
-10 184 255|============================================== *
-9 229 263|==========================================================*
-8 227 197|=================================================*=======
-7 169 124|==============================*============
-6 78 71|=================*==
-5 43 39|=========*=
-4 26 21|=====*=
-3 15 11|==*=
-2 11 5|=*=
-1 8 3|*=
0 4 1|*
1 3 0|=
2 1 0|=
3 0 0|
4 1 0|=
> 5 11 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 62.3100
P(chi-square) = 1.321e-09

Total sequences searched: 1161

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: