Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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5 accessions found for Rhizobium leguminosarum bv. trifolii WSM2304  

Data for CP001193  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001193.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001193_0223 CDS_250043-252751 78.2 8.8e-23 1
CP001193_0372 CDS_411237-409309 36.0 8.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001193_0223 1/1 669 737 .. 1 87 [] 78.2 8.8e-23
CP001193_0372 1/1 281 347 .. 1 87 [] 36.0 8.1e-11

Alignments of top-scoring domains:
CP001193_0223: domain 1 of 1, from 669 to 737: score 78.2, E = 8.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l ++sH+L+TPL+aI+g+a +L++++ + ++ee+r
CP001193_0 669 LRSALLTSISHDLKTPLAAILGAAGTLRDYF-------ASMPEEDR- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t+ +e+erl+r i +lLd+++ie+g
CP001193_0 708 ----------SDLLSTVVDESERLNRFIANLLDMTKIESG 737

CP001193_0372: domain 1 of 1, from 281 to 347: score 36.0, E = 8.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L a++g +e+L++ + +
CP001193_0 281 AIGQLTGGIAHDFNNLLMAVLGSLEILKK---------RMPQDRSL- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + a+r +L +++L +sr ++
CP001193_0 318 ----------TSLVDNAMQGAQRGAALTQRMLAFSRRQEL 347


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 4 0|==
-12 9 10|====*
-11 43 53|====================== *
-10 85 98|=========================================== *
-9 94 102|=============================================== *
-8 80 76|=====================================*==
-7 52 48|=======================*==
-6 47 27|=============*==========
-5 19 15|=======*==
-4 4 8|== *
-3 5 4|=*=
-2 1 2|*
-1 2 1|*
0 1 0|=
1 0 0|
> 2 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 19.5381
P(chi-square) = 0.006659

Total sequences searched: 450

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: