Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

5 accessions found for Rhizobium leguminosarum bv. trifolii WSM2304  

Data for CP001194  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001194.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001194_0084 CDS_102996-104123 64.4 3.6e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001194_0084 1/1 160 225 .. 1 87 [] 64.4 3.6e-19

Alignments of top-scoring domains:
CP001194_0084: domain 1 of 1, from 160 to 225: score 64.4, E = 3.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LR+PL+aI g ++ + ++l+e+q
CP001194_0 160 LREQFIAVLGHDLRNPLAAIDGGMRAIAR---------SPLNEQQ-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + ++r++ Li+d++d++r + g
CP001194_0 196 ----------ERIVSLVAATVKRMSGLIDDIMDFARGRLG 225


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 1 0|=
-12 11 5|====*======
-11 11 26|=========== *
-10 33 49|================================= *
-9 54 50|=================================================*====
-8 25 37|========================= *
-7 39 23|======================*================
-6 24 13|============*===========
-5 12 7|======*=====
-4 5 4|===*=
-3 3 2|=*=
-2 1 1|*
-1 1 0|=
0 0 0|
> 1 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 45.5323
P(chi-square) = 1.078e-07

Total sequences searched: 223

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: