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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Oligotropha carboxidovorans OM5  

Data for CP001196  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001196.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001196_0397 CDS_387508-385286 90.8 2e-25 1
CP001196_2502 CDS_2481569-2483140 83.5 2.4e-23 1
CP001196_0636 CDS_635043-636344 79.3 3.5e-22 1
CP001196_2590 CDS_2565514-2563709 74.8 6.6e-21 1
CP001196_0175 CDS_183677-186382 73.2 2e-20 1
CP001196_3525 CDS_3534499-3536322 70.2 1.3e-19 1
CP001196_0480 CDS_477856-475406 64.5 5.5e-18 1
CP001196_1103 CDS_1093894-1090694 62.7 1.8e-17 1
CP001196_0694 CDS_693410-689847 59.2 1.8e-16 1
CP001196_3046 CDS_3056946-3054295 59.0 2e-16 1
CP001196_2058 CDS_2038453-2039610 55.7 1.8e-15 1
CP001196_2530 CDS_2516717-2515308 46.9 5.5e-13 1
CP001196_3153 CDS_3158290-3156902 43.2 6.3e-12 1
CP001196_0538 CDS_534543-532939 42.3 1.1e-11 1
CP001196_2060 CDS_2041166-2043502 41.4 2e-11 1
CP001196_0737 CDS_737479-738942 40.6 3.3e-11 1
CP001196_0858 CDS_851811-850477 38.8 1.1e-10 1
CP001196_0241 CDS_245297-243936 36.8 4e-10 1
CP001196_3085 CDS_3094437-3095960 34.7 1.5e-09 1
CP001196_1381 CDS_1388681-1391221 34.4 1.9e-09 1
CP001196_3045 CDS_3054302-3052680 29.7 4.1e-08 1
CP001196_0132 CDS_136223-137656 29.2 5.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001196_0397 1/1 233 298 .. 1 87 [] 90.8 2e-25
CP001196_2502 1/1 257 326 .. 1 87 [] 83.5 2.4e-23
CP001196_0636 1/1 198 265 .. 1 87 [] 79.3 3.5e-22
CP001196_2590 1/1 345 414 .. 1 87 [] 74.8 6.6e-21
CP001196_0175 1/1 668 736 .. 1 87 [] 73.2 2e-20
CP001196_3525 1/1 373 438 .. 1 87 [] 70.2 1.3e-19
CP001196_0480 1/1 584 652 .. 1 87 [] 64.5 5.5e-18
CP001196_1103 1/1 835 904 .. 1 87 [] 62.7 1.8e-17
CP001196_0694 1/1 803 868 .. 1 87 [] 59.2 1.8e-16
CP001196_3046 1/1 660 723 .. 1 83 [. 59.0 2e-16
CP001196_2058 1/1 138 193 .. 1 78 [. 55.7 1.8e-15
CP001196_2530 1/1 237 303 .. 1 87 [] 46.9 5.5e-13
CP001196_3153 1/1 259 317 .. 1 87 [] 43.2 6.3e-12
CP001196_0538 1/1 153 219 .. 1 87 [] 42.3 1.1e-11
CP001196_2060 1/1 525 596 .. 1 87 [] 41.4 2e-11
CP001196_0737 1/1 107 172 .. 1 87 [] 40.6 3.3e-11
CP001196_0858 1/1 229 294 .. 1 87 [] 38.8 1.1e-10
CP001196_0241 1/1 241 302 .. 1 87 [] 36.8 4e-10
CP001196_3085 1/1 277 348 .. 1 87 [] 34.7 1.5e-09
CP001196_1381 1/1 469 535 .. 1 87 [] 34.4 1.9e-09
CP001196_3045 1/1 153 224 .. 1 87 [] 29.7 4.1e-08
CP001196_0132 1/1 246 315 .. 1 87 [] 29.2 5.6e-08

Alignments of top-scoring domains:
CP001196_0397: domain 1 of 1, from 233 to 298: score 90.8, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL++I+g++ lLl+ t l++eq
CP001196_0 233 AKSKFLAVASHEIRTPLNGILGMSNLLLD---------TQLNPEQ-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + +++++e l +L+++lLd+s+ieag
CP001196_0 269 ----------AAYAKAVKDSGEALVSLVEELLDFSKIEAG 298

CP001196_2502: domain 1 of 1, from 257 to 326: score 83.5, E = 2.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla +sHELRTPL+aI+g++e+++ + ++
CP001196_2 257 SKSRFLAQMSHELRTPLNAILGFSEVMKS---------EIFGPHA-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+p y++y i++++ +ll+Lin++Ldlsrieag
CP001196_2 293 ------VPVYKDYSADIHNSGVHLLNLINEILDLSRIEAG 326

CP001196_0636: domain 1 of 1, from 198 to 265: score 79.3, E = 3.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++++L+ +++++++++
CP001196_0 198 MRADFVANASHELRTPLAALSGFIDTLQG---------PARDDPKAR 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a r+ rLi+dlL lsr e
CP001196_0 236 ----------ERFLGIMHAQATRMARLIDDLLSLSRVELS 265

CP001196_2590: domain 1 of 1, from 345 to 414: score 74.8, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHELRTPL+aI+g++e+L + + ++ r
CP001196_2 345 SKSRFLATMSHELRTPLNAIIGFSEMLTH------EDEMKIDAARR- 384

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey i +++ +ll+ +n +Ld+s++e+g
CP001196_2 385 ----------HEYAGLINESGLHLLSVVNGILDMSKMESG 414

CP001196_0175: domain 1 of 1, from 668 to 736: score 73.2, E = 2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l +lsH+L+TPL++I+g a +L++++ t l++ r
CP001196_0 668 LRSALLTSLSHDLKTPLASILGSAGALRDYS-------TSLTDSGR- 706

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ti +eaerl+r i +lLd++r+e+g
CP001196_0 707 ----------VELLTTIVEEAERLNRFIANLLDMTRLESG 736

CP001196_3525: domain 1 of 1, from 373 to 438: score 70.2, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HEL++PLt++r ++e+L +++++ r
CP001196_3 373 DIERFAADVAHELKNPLTSMRSAVETLPL----------AKTDDSR- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +i+++++rl+rLi+d+ d sr++a+
CP001196_3 409 ----------GRLLAVIEHDVRRLDRLISDISDASRLDAE 438

CP001196_0480: domain 1 of 1, from 584 to 652: score 64.5, E = 5.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ ++s ELR PLt+I+g+a+ L + + ++++ +q
CP001196_0 584 MKVDFVHHVSYELRSPLTTIIGFAHFLSD------PATGPMTVKQ-- 622

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl i +++ ll++in++Ldl+ i ag
CP001196_0 623 ----------SEYLGYITTSTNALLAIINNILDLATINAG 652

CP001196_1103: domain 1 of 1, from 835 to 904: score 62.7, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak ++la lsHE R P++aI+g+a+++ e + ++l+ e
CP001196_1 835 AKADLLARLSHEVRAPVSAIIGFADVMIE------ERFGALGNER-- 873

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y + i+ ++er ++i+d+Ldlsrie+g
CP001196_1 874 ---------YIDYMKDIRASGERVISIIDDMLDLSRIESG 904

CP001196_0694: domain 1 of 1, from 803 to 868: score 59.2, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH++ +PL+a r+y+ L e + e+
CP001196_0 803 SKTRFLAAASHDILQPLNAARLYVTSLVE---------RQSGGET-- 838

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i++++e +++++ lLd+sr++ag
CP001196_0 839 ----------ARLVDNIDESLEAIEEILGALLDISRLDAG 868

CP001196_3046: domain 1 of 1, from 660 to 723: score 59.0, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a++sHELR+PL ++++ + +L++ ++ +++ +
CP001196_3 660 TIGQITATVSHELRNPLGSLMASVAVLKR--------TPPDTSPGV- 697

peLRledpeyreyletilreaerllrLindlLdlsr<-*
r l++i+r +er+ r+i+dlL++sr
CP001196_3 698 ----------RGELDRIQRNIERCARIIEDLLQFSR 723

CP001196_2058: domain 1 of 1, from 138 to 193: score 55.7, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+l+HE+++PL++Irg+a+lL+ +++e+
CP001196_2 138 SVTALAAMLAHEIKNPLSGIRGAAQLLEQ----------VATPED-- 172

peLRledpeyreyletilreaerllrLindl<-*
r +++ i +ea+r+ L++++
CP001196_2 173 ----------RALTRLICEEADRIVTLVDRM 193

CP001196_2530: domain 1 of 1, from 237 to 303: score 46.9, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r ae +l+ + +e
CP001196_2 237 GLKEVSDNIAHDLKTPLTRLRNRAEEALA---------DGHDEAS-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+le+ ++e++ l r n lL ++r+e+g
CP001196_2 273 ---------YREALERTIEESDGLIRTFNALLMIARAESG 303

CP001196_3153: domain 1 of 1, from 259 to 317: score 43.2, E = 6.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ + lL + +++
CP001196_3 259 QRTTMLAGVSHDLRTILTRFKLELALLGD-------------APE-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++++ ++ +++d L ++r + g
CP001196_3 291 -------------AEGMRKDVDEMSGMLEDYLAFARGDGG 317

CP001196_0538: domain 1 of 1, from 153 to 219: score 42.3, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L a++g +el+++ l+++ +l
CP001196_0 153 AIGQLTGGIAHDFNNLLMAVMGSLELMRK----------RLPDDPKL 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le +l+ a+r L +++L ++r +
CP001196_0 190 ----------HTFLENALQGARRGATLTQRMLAFARRQDL 219

CP001196_2060: domain 1 of 1, from 525 to 596: score 41.4, E = 2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ + +e+ ++
CP001196_2 525 AWADVARRIAHEIKNPLTPIQLSAERIRRKFG------KTITEDRAI 565

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti r+++ ++r+++++ ++r+ +
CP001196_2 566 ---------FDQCTDTIVRQVDDIRRMVDEFSKFARMPKP 596

CP001196_0737: domain 1 of 1, from 107 to 172: score 40.6, E = 3.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la+ +HE RTPLt+I++ ++lL++ ++l++ +
CP001196_0 107 LVEAALAAFAHEVRTPLTGILAISSLLET---------SDLGARE-- 142

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +eti+ ae+l +L d ++ a
CP001196_0 143 ----------RRWVETIRAGAEHLAALATLYVDAAKSTAT 172

CP001196_0858: domain 1 of 1, from 229 to 294: score 38.8, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a f+an +HELRTP++a ++ ++ L +++++
CP001196_0 229 AEHSFTANSAHELRTPVAAALAQTQRLFI---------EAKDDAI-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + i+ +++rl+rL + l++l+r+e g
CP001196_0 265 ----------RERARLIETALQRLSRLSEKLMQLARAEGG 294

CP001196_0241: domain 1 of 1, from 241 to 302: score 36.8, E = 4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ + +l+H L+TPLt++ ++a + e +
CP001196_0 241 RARRQAGDLAHGLKTPLTVLGALARQASE-------------DGR-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+ e+++++r+++++L +r+ ag
CP001196_0 273 ----------DDIAQSIDGEVHQMRRQVDRVLARARANAG 302

CP001196_3085: domain 1 of 1, from 277 to 348: score 34.7, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PL+aI+ y + ++ +la dte + ++
CP001196_3 277 AMGEMASALAHELNQPLAAISNYMKGSRR----LLAADTEENRHKI- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ ++a r ++i++l+++ ++
CP001196_3 319 ----------ESAMDRAAEQAIRAGQIIRRLREFVSRGES 348

CP001196_1381: domain 1 of 1, from 469 to 535: score 34.4, E = 1.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L+aI+++ + Ll+ ++ +++
CP001196_1 469 AVGQLAGGIAHDFNNVLSAIMMANDFLLN--------AHKPTDPS-- 505

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a r L+++lL +sr ++
CP001196_1 506 ----------FQDIMQIKQNATRAATLVRQLLAFSRRQTL 535

CP001196_3045: domain 1 of 1, from 153 to 224: score 29.7, E = 4.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++H++++ L++++g++ l++e++ +a+ + ++
CP001196_3 153 ALGQLTAGVAHDFNNLLSVVIGNLRLAREDV---SASAIADTAVL-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ +l++a + +++L l r +a
CP001196_3 195 ----------RELVQDALDAALGGVETTRRFLALGRNQAL 224

CP001196_0132: domain 1 of 1, from 246 to 315: score 29.2, E = 5.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HEL TPL++I + + L++ +a++ +++ +
CP001196_0 246 QIDGLAAAAAHELGTPLSTIVLISNELQK-----AAQSRSPDDPLI- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i+++a r+++++ + +ls +a+
CP001196_0 287 -----------GDLTAIREQAMRCRDILAKITQLSSGGAP 315


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 28 0|===
-13 100 2|*========
-12 244 85|=======*=============
-11 368 441|=============================== *
-10 628 818|===================================================== *
-9 705 845|==========================================================*
-8 585 632|================================================= *
-7 443 398|=================================*===
-6 265 229|===================*===
-5 144 125|==========*=
-4 89 67|=====*==
-3 45 35|==*=
-2 28 18|=*=
-1 10 9|*
0 10 5|*
1 1 2|*
2 0 1|*
3 2 0|=
4 1 0|=
> 5 26 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 412.0729
P(chi-square) = 0

Total sequences searched: 3722

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: