Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

15 accessions found for Borrelia burgdorferi ZS7  

Data for CP001205  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001205.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001205_0400 CDS_434443-429959 84.1 3.5e-24 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001205_0400 1/1 763 828 .. 1 87 [] 84.1 3.5e-24

Alignments of top-scoring domains:
CP001205_0400: domain 1 of 1, from 763 to 828: score 84.1, E = 3.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+an+sH++RTP+++I++++elL + t l++ q
CP001205_0 763 AKTIFIANVSHDIRTPINGIMAATELLDT---------TILTDVQ-- 798

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i ++++ll+Li+d+L ls+i+ +
CP001205_0 799 ----------KDYVRMINYSSDSLLSLIDDILYLSKIDVN 828


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 4 0|==
-13 15 0|=====
-12 37 18|=====*=======
-11 93 95|===============================*
-10 118 177|======================================== *
-9 169 183|========================================================= *
-8 125 137|========================================== *
-7 100 86|============================*=====
-6 72 49|================*=======
-5 37 27|========*====
-4 17 14|====*=
-3 9 7|==*
-2 2 4|=*
-1 5 2|*=
0 2 1|*
> 1 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 56.9455
P(chi-square) = 5.176e-09

Total sequences searched: 808

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: