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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Comamonas testosteroni CNB-1  

Data for CP001220  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001220.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001220_3197 CDS_3622864-3621488 96.7 5.5e-27 1
CP001220_1514 CDS_1711603-1716870 91.3 1.8e-25 2
CP001220_2587 CDS_2953208-2956477 88.4 1.2e-24 1
CP001220_2585 CDS_2949182-2951956 86.2 5.2e-24 1
CP001220_1995 CDS_2265665-2263140 82.6 5.3e-23 1
CP001220_2721 CDS_3112862-3111396 70.3 1.6e-19 1
CP001220_0533 CDS_593649-596342 68.7 4.8e-19 1
CP001220_4387 CDS_4927113-4928534 68.0 7.2e-19 1
CP001220_2474 CDS_2837866-2839260 66.0 2.7e-18 1
CP001220_3269 CDS_3707764-3706655 63.3 1.6e-17 1
CP001220_0823 CDS_924066-922612 62.1 3.5e-17 1
CP001220_4784 CDS_5348699-5350207 61.6 5e-17 1
CP001220_2499 CDS_2862927-2861524 60.2 1.2e-16 1
CP001220_3968 CDS_4447350-4445983 58.7 3.2e-16 1
CP001220_2246 CDS_2564962-2562395 57.3 8.2e-16 1
CP001220_0495 CDS_543729-545558 53.3 1.1e-14 1
CP001220_4621 CDS_5172822-5171464 52.3 2.1e-14 1
CP001220_0362 CDS_394567-396888 51.2 4.4e-14 1
CP001220_1211 CDS_1363074-1361599 51.1 4.6e-14 1
CP001220_4079 CDS_4580355-4582160 50.0 9.4e-14 1
CP001220_2169 CDS_2473279-2471129 48.5 2.5e-13 1
CP001220_0106 CDS_118557-119777 48.0 3.5e-13 1
CP001220_4005 CDS_4491626-4490433 46.2 1.1e-12 1
CP001220_4494 CDS_5036056-5038719 45.1 2.2e-12 1
CP001220_2682 CDS_3061592-3059760 44.6 3.2e-12 1
CP001220_0136 CDS_156603-155431 42.4 1.4e-11 1
CP001220_2380 CDS_2719648-2717774 41.6 2.3e-11 1
CP001220_4209 CDS_4729138-4727639 38.9 1.3e-10 1
CP001220_4746 CDS_5305592-5303529 37.5 3.2e-10 1
CP001220_1972 CDS_2235726-2234224 36.6 5.7e-10 1
CP001220_4293 CDS_4818197-4819711 34.9 1.7e-09 1
CP001220_0556 CDS_623214-624011 29.4 6.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001220_3197 1/1 210 276 .. 1 87 [] 96.7 5.5e-27
CP001220_1514 2/2 1022 1087 .. 1 87 [] 90.7 2.7e-25
CP001220_2587 1/1 496 561 .. 1 87 [] 88.4 1.2e-24
CP001220_2585 1/1 444 509 .. 1 87 [] 86.2 5.2e-24
CP001220_1995 1/1 607 673 .. 1 87 [] 82.6 5.3e-23
CP001220_2721 1/1 265 333 .. 1 87 [] 70.3 1.6e-19
CP001220_0533 1/1 670 735 .. 1 87 [] 68.7 4.8e-19
CP001220_4387 1/1 238 304 .. 1 87 [] 68.0 7.2e-19
CP001220_2474 1/1 225 291 .. 1 87 [] 66.0 2.7e-18
CP001220_3269 1/1 145 210 .. 1 87 [] 63.3 1.6e-17
CP001220_0823 1/1 269 334 .. 1 87 [] 62.1 3.5e-17
CP001220_4784 1/1 267 333 .. 1 87 [] 61.6 5e-17
CP001220_2499 1/1 243 309 .. 1 87 [] 60.2 1.2e-16
CP001220_3968 1/1 230 295 .. 1 87 [] 58.7 3.2e-16
CP001220_2246 1/1 604 674 .. 1 87 [] 57.3 8.2e-16
CP001220_0495 1/1 234 299 .. 1 87 [] 53.3 1.1e-14
CP001220_4621 1/1 239 306 .. 1 87 [] 52.3 2.1e-14
CP001220_0362 1/1 536 608 .. 1 87 [] 51.2 4.4e-14
CP001220_1211 1/1 257 320 .. 1 87 [] 51.1 4.6e-14
CP001220_4079 1/1 348 414 .. 1 87 [] 50.0 9.4e-14
CP001220_2169 1/1 337 403 .. 1 87 [] 48.5 2.5e-13
CP001220_0106 1/1 195 257 .. 1 87 [] 48.0 3.5e-13
CP001220_4005 1/1 160 230 .. 1 87 [] 46.2 1.1e-12
CP001220_4494 1/1 519 584 .. 1 87 [] 45.1 2.2e-12
CP001220_2682 1/1 292 387 .. 1 87 [] 44.6 3.2e-12
CP001220_0136 1/1 162 226 .. 1 87 [] 42.4 1.4e-11
CP001220_2380 1/1 399 467 .. 1 87 [] 41.6 2.3e-11
CP001220_4209 1/1 234 313 .. 1 87 [] 38.9 1.3e-10
CP001220_4746 1/1 450 525 .. 1 87 [] 37.5 3.2e-10
CP001220_1972 1/1 254 313 .. 1 87 [] 36.6 5.7e-10
CP001220_4293 1/1 273 343 .. 1 87 [] 34.9 1.7e-09
CP001220_0556 1/1 36 109 .. 1 87 [] 29.4 6.4e-08

Alignments of top-scoring domains:
CP001220_3197: domain 1 of 1, from 210 to 276: score 96.7, E = 5.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHE+RTPLt++ g++e+L++ +l e++r
CP001220_3 210 MRRDFVANVSHEIRTPLTVLAGFVETLQN---------LPLEEDER- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle + ++aer+++L++dlL+lsr+e
CP001220_3 247 ----------RRYLELMAQQAERMQHLVEDLLTLSRLEGS 276

CP001220_1514: domain 2 of 2, from 1022 to 1087: score 90.7, E = 2.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++a++g+++l + t l+ q
CP001220_1 1022 AKSQFLANMSHEIRTPMNAVLGMLQLVRQ---------TQLDTRQ-- 1057

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ +++++a++ll+L+nd+Ld+s+i+ag
CP001220_1 1058 ----------QDYVVKAQSAAQSLLALLNDILDFSKIDAG 1087

CP001220_2587: domain 1 of 1, from 496 to 561: score 88.4, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +++g++e+L + t+lseeq
CP001220_2 496 AKSTFLASMSHEIRTPLYGLLGTLEILAM---------TPLSEEQ-- 531

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ i++++ l++Li+d+Ld ++ie+g
CP001220_2 532 ----------RRHIDHIQNSSGILQQLISDILDVTKIESG 561

CP001220_2585: domain 1 of 1, from 444 to 509: score 86.2, E = 5.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+a+lsHE+RTPL +I g+ elL t l+ +q
CP001220_2 444 AKTMFFATLSHEIRTPLYGIVGTMELLAL---------TGLNVQQ-- 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti++++ llr ind Ldlsrieag
CP001220_2 480 ----------QQYLNTIQQSSATLLRTINDTLDLSRIEAG 509

CP001220_1995: domain 1 of 1, from 607 to 673: score 82.6, E = 5.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+an+sHELRTPL +I+g++el + ++ ++++
CP001220_1 607 VKSEFVANMSHELRTPLQSIIGFSELGQL--------RSRATPKL-- 643

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ i+ +++r+l+L+ndlLd +++e++
CP001220_1 644 ----------GEMFYDIHAAGQRMLALVNDLLDVAKLESP 673

CP001220_2721: domain 1 of 1, from 265 to 333: score 70.3, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPL+++ gy+e+Ll +d+ l + +r
CP001220_2 265 ERRELIANISHDLRTPLSSLHGYLETLLL-------KDASLEPAER- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl ++l++++r +L + l +l+r+e g
CP001220_2 304 ----------RRYLGIALDQSRRVGALSQSLFELARLEYG 333

CP001220_0533: domain 1 of 1, from 670 to 735: score 68.7, E = 4.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRTPLt+I+g+a+++l ++ +
CP001220_0 670 MRNTLLSAVSHDLRTPLTGILGAAQAALP---------HAPQGPA-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l i+++a+ l++L+++lL ++r+++g
CP001220_0 706 ----------HHMLVQIRNQAQALQQLVDNLLAMARLQQG 735

CP001220_4387: domain 1 of 1, from 238 to 304: score 68.0, E = 7.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HEL+TPLt+++ +el+l+ +++++++
CP001220_4 238 QMEAFNADVAHELNTPLTTLISSCELALR---------KPRDADEL- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l + l++++r+ ++ d+L ls ++ g
CP001220_4 275 ----------RDILASNLEDLQRMAGIVADMLFLSHADRG 304

CP001220_2474: domain 1 of 1, from 225 to 291: score 66.0, E = 2.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HEL+TPLt+++ +el+l+ ++s+ ++
CP001220_2 225 QMEAFNADVAHELNTPLTTLISSCELALR---------KPRSAVEL- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + l++++r+ ++ d+L ls ++ g
CP001220_2 262 ----------QDILASNLEDLQRMAGIVADMLFLSHADRG 291

CP001220_3269: domain 1 of 1, from 145 to 210: score 63.3, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL++ + ++e
CP001220_3 145 ANKELIRNLAHEIKNPLGGIRGAAQLLQM---------DLVTPEL-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+ +i++ea+rl++L+++lL r ++
CP001220_3 181 ----------LEYTTVIIHEADRLQALVDRLLAPHRHPHE 210

CP001220_0823: domain 1 of 1, from 269 to 334: score 62.1, E = 3.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++l HEL+ P++aIrg+ elL+e el++++r
CP001220_0 269 YIEGYVRALTHELKSPVAAIRGAGELLQE----------ELPPQDR- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ rl++Li++lL+lsr+e+
CP001220_0 305 ----------AMFAGQVVDQSLRLQNLIDQLLQLSRLEQR 334

CP001220_4784: domain 1 of 1, from 267 to 333: score 61.6, E = 5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla+++H+L+TPL+++r+ a+l+++ + + e++
CP001220_4 267 TQKRFLADAAHQLKTPLAGLRMQADLAQR---------EGTNTEDL- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i r++ r + +n+lL l+r+e+
CP001220_4 304 ----------KRSLAQIGRSSMRATHTVNQLLALARAESA 333

CP001220_2499: domain 1 of 1, from 243 to 309: score 60.2, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+++l+HELRTP++ +++ +++ l+ +++++ +
CP001220_2 243 RLTDFASDLAHELRTPISNLLTQTQVVLA---------SKRDAAT-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++l + +e +rl r+++d+L l++ e g
CP001220_2 279 ---------YRDILASNAEEFQRLARMVSDMLFLAKTERG 309

CP001220_3968: domain 1 of 1, from 230 to 295: score 58.7, E = 3.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a+++HELR PL+a+++ ++lL++ ++ s+e
CP001220_3 230 AQQNFVADAAHELRSPLAALQLQLQLLRK---------ATDSSER-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ + +er +rL+++lL l+r ea
CP001220_3 266 ----------ESAQARLAQGIERARRLVEQLLALARQEAR 295

CP001220_2246: domain 1 of 1, from 604 to 674: score 57.3, E = 8.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PLtaI+ y++ +l++l+ ++l++eq+
CP001220_2 604 TMGEMASSVAHELNQPLTAISNYSSGMLTRLE-----NGTLTPEQM- 644

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+ ++a+r ++i++++ + + ++
CP001220_2 645 ----------KFALEKTAHQAQRAGQIIQRIRSFVKKSEP 674

CP001220_0495: domain 1 of 1, from 234 to 299: score 53.3, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sH+LR+PL+a+ ++++++ ++++e
CP001220_0 234 EKNWFISAASHDLRQPLHAMGLMLQAAHQ---------RNQDDEL-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ l ++ ndl+dlsr+e
CP001220_0 270 ----------AQLLQEMQACTRDLGSMFNDLMDLSRLEGD 299

CP001220_4621: domain 1 of 1, from 239 to 306: score 52.3, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ ++HELRTPL++I + a++L+ ++ ++ ++
CP001220_4 239 RERNLANEVAHELRTPLASIALQAQALKSGG-------QTDTAVM-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i r+a + + +++lL+l+r++ g
CP001220_4 277 ----------QAALQRIGRDALHAGHVLDQLLTLARAGRG 306

CP001220_0362: domain 1 of 1, from 536 to 608: score 51.2, E = 4.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ ++HE+++PLt I++ ae L ++l ++l + +++
CP001220_0 536 AWGEVARRVAHEIKNPLTPIQLSAERLAMKLT------DKLQPAEQA 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ti +++ + rL++++++++r+ a
CP001220_0 577 LL--------AKSVKTIVDQVGAMKRLVDEFREYARLPAA 608

CP001220_1211: domain 1 of 1, from 257 to 320: score 51.1, E = 4.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sH+LRTPL++++ ++ +++ ++ ++ q+
CP001220_1 257 NQKRFVRDASHQLRTPLAVLKVQVQSAKR---------GDIPPAQA- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ ++r r n++L l++ e+
CP001220_1 294 -------------FAEIDDTVDRATRVANQMLALAKVEQL 320

CP001220_4079: domain 1 of 1, from 348 to 414: score 50.0, E = 9.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ a+++HE+R+PL+aI + lL e+l + ++ +q
CP001220_4 348 SMGRMSAAVAHEIRNPLAAITQANALLAEDL-------ASQPGPQ-- 385

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + a+rl r+ +++L l+r ++g
CP001220_4 386 -----------QLCRIVGQNADRLARIAEEILNLARVQQG 414

CP001220_2169: domain 1 of 1, from 337 to 403: score 48.5, E = 2.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ + aI+g++el+++ d+ ++
CP001220_2 337 AVGTMAGGIAHDFNNIVGAILGNVELAKA--------DSCGNPAA-- 373

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i+++++r ++L++++L++sr + +
CP001220_2 374 ----------MESLREIEKAGRRARDLVRQILTFSRNDLP 403

CP001220_0106: domain 1 of 1, from 195 to 257: score 48.0, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +lan+sHELR PLt Ir+ +e + + +++s+
CP001220_0 195 SHKSLLANASHELRSPLTRIRMGLEFMGD---------DPASARA-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i+r + l++L++++L sr+++
CP001220_0 231 -------------KAEIQRNIGELDQLVDEILLASRLDSS 257

CP001220_4005: domain 1 of 1, from 160 to 230: score 46.2, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+++HE ++PL+aI + + +++l ++ + e++
CP001220_4 160 SLGQVTASIAHEVNQPLAAIVTSGNASQRWLA-----QQPPNLEKA- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+il +a+r ++ i +++ ++r ea+
CP001220_4 201 ----------GQALERILGDARRASEVIARIRSMARGEAP 230

CP001220_4494: domain 1 of 1, from 519 to 584: score 45.1, E = 2.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r +++lL ++l +e
CP001220_4 519 YKTRFVASAVHDLLQPLNAARIFTSLLPTYL---------HDEAG-- 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++++++ + ++++ lLd+sr+e+g
CP001220_4 555 ----------RQLAQRVDKALASQDAILTSLLDISRMESG 584

CP001220_2682: domain 1 of 1, from 292 to 387: score 44.6, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++ +++HELRTPLta++++++++++ + +++ +
CP001220_2 292 RERRWSDDAAHELRTPLTAVKTHVQVAQM---------AVANAGSQM 329

peLR.l.................edpeyreyletilreaerllrLindlL
+LR+ ++ ++++ +++ +++ + +++le + + +e+l++ +++lL
CP001220_2 330 VALRdQpgagkedaaprpisetaQWQMTQQALEQAGEGVEHLQHTLEQLL 379

dlsrieag<-*
l+r++ +
CP001220_2 380 LLARLDCQ 387

CP001220_0136: domain 1 of 1, from 162 to 226: score 42.4, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a++sHELRTPLt++++ ++++ + + ++ q+
CP001220_0 162 ERLATAASISHELRTPLTVLQARLHAICD---------GVIDSSQAE 199

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+t+l ++e+l rL+ dl +ls ++ag
CP001220_0 200 -------------MKTLLAQVEHLGRLVGDLHTLSMADAG 226

CP001220_2380: domain 1 of 1, from 399 to 467: score 41.6, E = 2.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++HEL++PL+a+r++a +++l + +e +
CP001220_2 399 VIGQLSTEVAHELNQPLAALRALAGNSQRFL-------ERGQSEMV- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ + +er+ r+ +l+ ++r ag
CP001220_2 438 ----------QSNLQRMAELTERMGRITGQLRNFARKSAG 467

CP001220_4209: domain 1 of 1, from 234 to 313: score 38.9, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+++f+a+++H+LRTPL+a+++ +e+ + +++ + ++++ eq+
CP001220_4 234 GQRRFVADAAHQLRTPLAALQTQVEAWALSG--QeARRLAKRTGEQA 278

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L e +e ++++++r ++L ++lL lsr++a
CP001220_4 279 QVVLT------VEQIEQLRDATRRTSQLARQLLALSRADAR 313

CP001220_4746: domain 1 of 1, from 450 to 525: score 37.5, E = 3.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++++lsHEL +PL+aI+ ya l+ +l ++++ s +l
CP001220_4 450 TVGEMASMLSHELTQPLAAISSYATGSLN----LLEHEPTDSQVPHL 492

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L r +le+i +a+r + i ++d+ r +
CP001220_4 493 KDL-------RMALERISFQADRAGKVIKSVRDFVRRRDK 525

CP001220_1972: domain 1 of 1, from 254 to 313: score 36.6, E = 5.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ + ++
CP001220_1 254 DRAVMLAGISHDLRTPLARLRLETEM------------SVYDDVA-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++ +l++ i+ +Ld++r ++
CP001220_1 287 -------------REHMVADIVQLDATIDKFLDYARPDHR 313

CP001220_4293: domain 1 of 1, from 273 to 343: score 34.9, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HEL++PLta++++++++++ l+gd+e + + +
CP001220_4 273 QLGELAAGMAHELNQPLTALLANTQAAQR-----LLGDEEPDLDMA- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + + + +a+r ++ + +l+
CP001220_4 314 ----------RHAMSQAVAQARRASAVVGRLRRVVERPDL 343

CP001220_0556: domain 1 of 1, from 36 to 109: score 29.4, E = 6.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++ ++sH+LR PL ++++ l e l++++ ++e++
CP001220_0 36 AQQEWMHAVSHDLRAPLRHLLAFNPLVAE-----LLQSASPGAEDLE 77

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ r +l+t++++a+r+ ++ + lL+l r+++
CP001220_0 78 EA--------RSFLQTMDQSAQRMAAMFDGLLQLNRAQSH 109


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 1 0|=
-14 8 0|=
-13 48 3|*==
-12 166 109|======*====
-11 408 569|========================== *
-10 785 1056|================================================== *
-9 938 1090|==========================================================*
-8 860 816|==================================================*===
-7 621 514|================================*======
-6 404 296|==================*=======
-5 234 162|==========*====
-4 146 86|=====*====
-3 66 45|==*==
-2 47 24|=*=
-1 16 12|*
0 9 6|*
1 3 3|*
2 3 1|*
3 0 0|
4 1 0|=
5 1 0|=
> 6 38 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 332.9943
P(chi-square) = 0

Total sequences searched: 4803

Whole sequence top hits:
tophits_s report:
Total hits: 32
Satisfying E cutoff: 32
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 32
Satisfying E cutoff: 32
Total memory: 33K


Acknowledgements:

This research is funded by:

Developed by: