Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

2 accessions found for Rickettsia peacockii str. Rustic  

Data for CP001227  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001227.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001227_0198 CDS_270286-268793 83.5 5.9e-24 1
CP001227_0677 CDS_947399-948838 58.9 5.3e-17 1
CP001227_0863 CDS_1196051-1194252 50.7 1.2e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001227_0198 1/1 268 333 .. 1 87 [] 83.5 5.9e-24
CP001227_0677 1/1 272 330 .. 1 87 [] 58.9 5.3e-17
CP001227_0863 1/1 371 441 .. 1 87 [] 50.7 1.2e-14

Alignments of top-scoring domains:
CP001227_0198: domain 1 of 1, from 268 to 333: score 83.5, E = 5.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L + e+
CP001227_0 268 SNTKFFANISHELRTPLNAIIGFSEILMS---------ERDAEKS-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i +++++ll++ind+Ldls++ a
CP001227_0 304 ----------KNYIKDINDAGKHLLSMINDILDLSKASAD 333

CP001227_0677: domain 1 of 1, from 272 to 330: score 58.9, E = 5.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ +la++sH+LRTPLt +++ +el++e +e+
CP001227_0 272 KKTTMLAMISHDLRTPLTRMKLQLELMEE-------------SEE-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++ ++++in Ld+++ +
CP001227_0 304 -------------IEGLKQDILTMQQMINSYLDFAKGAST 330

CP001227_0863: domain 1 of 1, from 371 to 441: score 50.7, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+ + s+e +
CP001227_0 371 AWSDVAKKVAHEIKNPLTPILLASERLLK----------KFSPEIK- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e++ yl+ i+r ++ + ++++++ ++r+ a+
CP001227_0 407 -----ERVEFENYLKMIIRHTNDIKNIVSEFVLFARLPAP 441


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 3 0|=
-13 12 0|===
-12 50 21|=====*=======
-11 110 109|===========================*
-10 166 203|========================================== *
-9 210 210|====================================================*
-8 129 157|================================= *
-7 82 99|===================== *
-6 71 57|==============*===
-5 41 31|=======*===
-4 16 16|===*
-3 13 8|=*==
-2 11 4|*==
-1 6 2|*=
> 0 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 62.7096
P(chi-square) = 4.016e-10

Total sequences searched: 927

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: