Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

1 accessions found for Sulfurihydrogenibium azorense Az-Fu1  

Data for CP001229  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001229.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001229_1250 CDS_1201154-1200156 74.9 2.9e-21 1
CP001229_0643 CDS_596475-595063 64.3 3e-18 1
CP001229_1628 CDS_1560732-1562300 37.8 9.5e-11 1
CP001229_1455 CDS_1393465-1391498 29.4 2.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001229_1250 1/1 111 176 .. 1 87 [] 74.9 2.9e-21
CP001229_0643 1/1 245 311 .. 1 87 [] 64.3 3e-18
CP001229_1628 1/1 298 363 .. 1 87 [] 37.8 9.5e-11
CP001229_1455 1/1 445 510 .. 1 81 [. 29.4 2.3e-08

Alignments of top-scoring domains:
CP001229_1250: domain 1 of 1, from 111 to 176: score 74.9, E = 2.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f++n+sHEL+TP+++++ ++e+++e e+++ +
CP001229_1 111 AKKDFVSNVSHELKTPISVLKSAVETIEE----------EKDPVMI- 146

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++++ +e++++LindlL l+r+e++
CP001229_1 147 ----------KKFVNIAKKRIEQMDHLINDLLILARLESQ 176

CP001229_0643: domain 1 of 1, from 245 to 311: score 64.3, E = 3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e + +++H+L+TP+t Ir ae Ll+ ++ls +
CP001229_0 245 TLKETTESIAHDLKTPITRIRSSAENLLM--------KGNLSNDC-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l i++e+++l ++i+dlL+ls++e+g
CP001229_0 282 ----------GNLLVYIIEETDSLTQMIEDLLTLSKLESG 311

CP001229_1628: domain 1 of 1, from 298 to 363: score 37.8, E = 9.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a ++HE+++ L +I+ +a +++ ++++e +
CP001229_1 298 AMGEMSAKIAHEIKNALYSISNAANYIKN----------NANDEII- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++i++e+ rl+++ +L +s++ ++
CP001229_1 334 ----------KEFGKIIKEESYRLNDMTVSFLNFSKLIEP 363

CP001229_1455: domain 1 of 1, from 445 to 510: score 29.4, E = 2.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e + ++HE+++PLt I++ ae + + ++ ++++
CP001229_1 445 MWKEVAQRIAHEIKNPLTPIKLSAERIIN-------QWKKKNPNI-- 482

peLRledpeyreyletilreaerllrLindlLdl<-*
d +++++ +i++e+e+l++L+ ++ ++
CP001229_1 483 ------DQIIEKATLVIISETEHLSQLVKEFNQF 510


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 7 0|==
-13 26 1|*====
-12 85 39|======*========
-11 235 204|=================================*======
-10 319 379|====================================================== *
-9 302 391|=================================================== *
-8 252 293|========================================== *
-7 203 184|==============================*===
-6 127 106|=================*====
-5 70 58|=========*==
-4 40 31|=====*=
-3 15 16|==*
-2 11 8|=*
-1 10 4|*=
0 9 2|*=
1 1 1|*
2 1 0|=
> 3 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 104.5405
P(chi-square) = 6.699e-18

Total sequences searched: 1725

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: