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Thermotogae
Classification of phyla is from NCBI page
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7 projects found  

2 accessions found for Persephonella marina EX-H1  

Data for CP001230  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001230.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001230_1468 CDS_1439245-1441245 83.2 1.5e-23 1
CP001230_1546 CDS_1526589-1527608 73.9 6.6e-21 1
CP001230_1394 CDS_1340165-1341322 52.2 9.3e-15 1
CP001230_0940 CDS_908118-906958 45.3 8.2e-13 1
CP001230_1517 CDS_1491812-1493848 44.5 1.4e-12 1
CP001230_1029 CDS_1002698-1004713 41.7 8.9e-12 1
CP001230_0785 CDS_750028-750999 38.8 5.9e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001230_1468 1/1 446 511 .. 1 87 [] 83.2 1.5e-23
CP001230_1546 1/1 115 180 .. 1 87 [] 73.9 6.6e-21
CP001230_1394 1/1 180 242 .. 1 87 [] 52.2 9.3e-15
CP001230_0940 1/1 180 244 .. 1 87 [] 45.3 8.2e-13
CP001230_1517 1/1 461 529 .. 1 87 [] 44.5 1.4e-12
CP001230_1029 1/1 457 528 .. 1 87 [] 41.7 8.9e-12
CP001230_0785 1/1 111 173 .. 1 87 [] 38.8 5.9e-11

Alignments of top-scoring domains:
CP001230_1468: domain 1 of 1, from 446 to 511: score 83.2, E = 1.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f++n+sHELRTPL++I+g+a+ L++ +e +ee +
CP001230_1 446 AKSAFISNMSHELRTPLNSIIGFAQYLQM---------AETDEENI- 482

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+ ++++ll++ind+Ld+++ieag
CP001230_1 483 -----------KAARSIELAGRHLLDMINDILDFAKIEAG 511

CP001230_1546: domain 1 of 1, from 115 to 180: score 73.9, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f++n+sHEL+TP+++++g +e+L+ e + +++
CP001230_1 115 AKKDFVSNVSHELKTPIAVMKGIVETLEQ----------EEDVQTI- 150

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ +++ ++++++LindlL l+++e+
CP001230_1 151 ----------RKFLNMAKKRIDQMDSLINDLLILAKLESK 180

CP001230_1394: domain 1 of 1, from 180 to 242: score 52.2, E = 9.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a l+HE+R+PL++I g+a+lL e ++ +e
CP001230_1 180 KLYRIGAELAHEIRNPLASIHGAAQLLSE---------GNINERL-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i++e+erl++L+ ++L ls+ ++
CP001230_1 216 -------------LGMIKKESERLDQLLKEFLLLSKPREI 242

CP001230_0940: domain 1 of 1, from 180 to 244: score 45.3, E = 8.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sH+LRTPLt+I +++ l++ + +
CP001230_0 180 KQERFTQNVSHDLRTPLTVIATNLYLIKQ---------KNFQNIE-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e i+ ++++ +Li+dlL +++i+
CP001230_0 216 -----------NHIENIQINVDYMKNLISDLLYMTQIGKK 244

CP001230_1517: domain 1 of 1, from 461 to 529: score 44.5, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+lsH++++PLtaI++ya + ++++ ++l +++++
CP001230_1 461 VIGKLAAGLSHDIKNPLTAISAYAFTVKKRG-------EKLKDKTLI 500

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i++ ++r +++in lL +++
CP001230_1 501 NLG-----------EKIENNSRRAEDIINKLLNYAKPSYY 529

CP001230_1029: domain 1 of 1, from 457 to 528: score 41.7, E = 8.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e + ++HE+++PLt Ir+ ae ++++++ + ++ +e
CP001230_1 457 AWKEIAKRIAHEIKNPLTPIRLSAERIKRQYE---NKNPKFPEIL-- 498

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++i+ e+++l++L+ d+ +++ + +
CP001230_1 499 ----------DKAVNVIHTEVDYLSKLVKDFSQFASSGIN 528

CP001230_0785: domain 1 of 1, from 111 to 173: score 38.8, E = 5.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
s++++n+ H+++ P+ +I+g a+lL+e ++ +
CP001230_0 111 TISRLISNIFHDMKGPIGGIKGSAQLLKE------------DPSD-- 143

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e il e++rl+++ind+ +++
CP001230_0 144 ----------QELIEDILYEVKRLESMINDVTLITKTIKL 173


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 3 0|=
-14 11 0|==
-13 31 1|*====
-12 106 45|======*=========
-11 230 234|=================================*
-10 374 435|====================================================== *
-9 351 449|=================================================== *
-8 295 336|=========================================== *
-7 202 212|============================= *
-6 135 122|=================*==
-5 100 67|=========*=====
-4 42 35|====*=
-3 31 18|==*==
-2 25 9|=*==
-1 18 5|*==
0 6 2|*
1 5 1|*
2 4 0|=
3 1 0|=
4 0 0|
5 3 0|=
6 0 0|
> 7 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 198.3659
P(chi-square) = 1.623e-36

Total sequences searched: 1981

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: