Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Dictyoglomus turgidum DSM 6724  

Data for CP001251  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001251.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001251_0689 CDS_758197-760644 102.8 3.7e-29 1
CP001251_1173 CDS_1256188-1255136 67.5 3.6e-19 1
CP001251_0143 CDS_142138-140903 61.0 2.6e-17 1
CP001251_0487 CDS_537684-538694 53.2 4.2e-15 1
CP001251_0268 CDS_293258-292071 52.3 7.5e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001251_0689 1/1 466 532 .. 1 87 [] 102.8 3.7e-29
CP001251_1173 1/1 119 186 .. 1 87 [] 67.5 3.6e-19
CP001251_0143 1/1 202 269 .. 1 87 [] 61.0 2.6e-17
CP001251_0487 1/1 114 181 .. 1 87 [] 53.2 4.2e-15
CP001251_0268 1/1 324 383 .. 1 79 [. 52.3 7.5e-15

Alignments of top-scoring domains:
CP001251_0689: domain 1 of 1, from 466 to 532: score 102.8, E = 3.7e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+an+sHEL+TPLtaI+gy+elL + +l++e +
CP001251_0 466 MKSEFVANVSHELKTPLTAIKGYSELLMK---------MNLPPERV- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y ++i++e+erl +L+ndlL+ srie+g
CP001251_0 503 ----------RNYYQIIYKESERLTQLVNDLLEVSRIESG 532

CP001251_1173: domain 1 of 1, from 119 to 186: score 67.5, E = 3.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
efl n+sHELRTPLt+I+ +++l e + + +++
CP001251_1 119 NFKEFLGNASHELRTPLTSIQILIDLFSE---------KKITLDEI- 155

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e++ +++e+er+++L+++lL lsr+eag
CP001251_1 156 ---------YNEFFPHLRKEVERMSKLVSNLLNLSRLEAG 186

CP001251_0143: domain 1 of 1, from 202 to 269: score 61.0, E = 2.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef +++sHEL+TPLt+I+gy+ +L++ +++ + +
CP001251_0 202 REEEFSSDISHELKTPLTSILGYIRMLKR--------WGKEDKRVL- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+++++++ + ++++ lL +sr ++
CP001251_0 240 ----------DESLDILENATLDMINMVDTLLKISRVPEE 269

CP001251_0487: domain 1 of 1, from 114 to 181: score 53.2, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELRTPL+ +++ +e+ l+ d++ + +q+
CP001251_0 114 RERKFISDVAHELRTPLAIMKTELEVSLK--------DPKINKKQL- 151

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++ l+e+erl +L +dlL + r+e +
CP001251_0 152 ----------LSVLQSNLEEVERLTKLAEDLLYIFRLEIN 181

CP001251_0268: domain 1 of 1, from 324 to 383: score 52.3, E = 7.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+ ++sHE+R+PLt I g +++L+ +++ s+e++
CP001251_0 324 ERKEFIKTVSHEFRNPLTIIFGQSQVLKSRFY--------SSPEKI- 361

peLRledpeyreyletilreaerllrLindlL<-*
+e+ e i+ +++r+++L+++lL
CP001251_0 362 ----------KEIAEQIEISSKRISDLVDRLL 383


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 3 0|=
-14 4 0|=
-13 38 1|*======
-12 79 39|======*=======
-11 178 206|============================== *
-10 313 383|===================================================== *
-9 305 396|=================================================== *
-8 288 296|================================================ *
-7 216 186|==============================*=====
-6 131 107|=================*====
-5 71 59|=========*==
-4 41 31|=====*=
-3 29 16|==*==
-2 21 8|=*==
-1 7 4|*=
0 6 2|*
1 2 1|*
2 3 0|=
3 0 0|
4 1 0|=
5 2 0|=
6 0 0|
> 7 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 117.7361
P(chi-square) = 1.456e-20

Total sequences searched: 1744

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: