Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Dictyoglomus turgidum DSM 6724  

Data for CP001251  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001251.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001251_1013 CDS_1092567-1094003 107.4 9.8e-31 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001251_1013 1/1 280 357 .. 1 94 [] 107.4 9.8e-31

Alignments of top-scoring domains:
CP001251_1013: domain 1 of 1, from 280 to 357: score 107.4, E = 9.8e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ+I+SLLr+Q r+ ++e + + aL+Es+nR+ S
CP001251_1 280 EIHHRVKNNLQTIASLLRIQIRRLESESA-----KLALQESINRINS 321

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +HE L+k e+ d+vd+ e+ ekL++ +q+y++ l
CP001251_1 322 IAYVHESLSKFEE-DRVDIVEVAEKLLNAFKQTYEH----------L 357


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 5 10|=*
-12 37 114|====== *
-11 313 318|=============================================*
-10 313 412|============================================= *
-9 364 348|=================================================*==
-8 255 233|=================================*===
-7 148 138|===================*==
-6 165 77|==========*=============
-5 59 41|=====*===
-4 35 22|===*=
-3 19 11|=*=
-2 11 6|*=
-1 6 3|*
0 5 1|*
1 1 0|=
2 1 0|=
3 1 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 205.9684
P(chi-square) = 4.289e-38

Total sequences searched: 1744

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: