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Classification of phyla is from NCBI page
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264 projects found  

4 accessions found for Shewanella baltica OS223  

Data for CP001252  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001252.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001252_0832 CDS_1004814-1010192 105.0 2.1e-29 1
CP001252_3665 CDS_4433922-4430206 97.9 2.2e-27 1
CP001252_1192 CDS_1442440-1439639 91.6 1.4e-25 1
CP001252_4060 CDS_4908955-4904066 86.0 5.3e-24 1
CP001252_0281 CDS_330172-326747 79.0 5.1e-22 1
CP001252_2922 CDS_3519608-3518310 78.4 7.5e-22 1
CP001252_1123 CDS_1355648-1358725 77.4 1.5e-21 1
CP001252_0166 CDS_200055-196480 73.3 2.1e-20 1
CP001252_0056 CDS_65944-64898 65.0 4.6e-18 1
CP001252_0255 CDS_301528-300482 59.3 1.9e-16 1
CP001252_1397 CDS_1676032-1677114 53.8 7e-15 1
CP001252_0248 CDS_295137-293761 52.2 2e-14 1
CP001252_2349 CDS_2870786-2869389 51.2 3.7e-14 1
CP001252_2401 CDS_2925990-2928158 51.0 4.3e-14 1
CP001252_3228 CDS_3905325-3906593 50.7 5.4e-14 1
CP001252_4062 CDS_4910082-4911398 47.2 5.2e-13 1
CP001252_3438 CDS_4160141-4158849 46.7 7.3e-13 1
CP001252_2481 CDS_3013726-3010286 46.6 7.5e-13 1
CP001252_4182 CDS_5065554-5063401 46.6 7.7e-13 1
CP001252_3700 CDS_4469859-4467706 45.6 1.5e-12 1
CP001252_2077 CDS_2513459-2515378 44.7 2.5e-12 1
CP001252_1510 CDS_1812423-1810627 39.2 9.7e-11 1
CP001252_3610 CDS_4364135-4362087 31.7 1.2e-08 1
CP001252_0291 CDS_340137-341393 29.7 4.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001252_0832 1/1 1042 1107 .. 1 87 [] 105.0 2.1e-29
CP001252_3665 1/1 721 786 .. 1 87 [] 97.9 2.2e-27
CP001252_1192 1/1 298 363 .. 1 87 [] 91.6 1.4e-25
CP001252_4060 1/1 899 964 .. 1 87 [] 86.0 5.3e-24
CP001252_0281 1/1 561 626 .. 1 87 [] 79.0 5.1e-22
CP001252_2922 1/1 205 271 .. 1 87 [] 78.4 7.5e-22
CP001252_1123 1/1 509 574 .. 1 87 [] 77.4 1.5e-21
CP001252_0166 1/1 704 770 .. 1 87 [] 73.3 2.1e-20
CP001252_0056 1/1 127 195 .. 1 87 [] 65.0 4.6e-18
CP001252_0255 1/1 126 191 .. 1 87 [] 59.3 1.9e-16
CP001252_1397 1/1 136 202 .. 1 87 [] 53.8 7e-15
CP001252_0248 1/1 244 306 .. 1 87 [] 52.2 2e-14
CP001252_2349 1/1 250 316 .. 1 87 [] 51.2 3.7e-14
CP001252_2401 1/1 498 563 .. 1 87 [] 51.0 4.3e-14
CP001252_3228 1/1 200 269 .. 1 87 [] 50.7 5.4e-14
CP001252_4062 1/1 233 293 .. 1 87 [] 47.2 5.2e-13
CP001252_3438 1/1 214 279 .. 1 87 [] 46.7 7.3e-13
CP001252_2481 1/1 786 852 .. 1 87 [] 46.6 7.5e-13
CP001252_4182 1/1 472 539 .. 1 87 [] 46.6 7.7e-13
CP001252_3700 1/1 494 562 .. 1 87 [] 45.6 1.5e-12
CP001252_2077 1/1 269 335 .. 1 87 [] 44.7 2.5e-12
CP001252_1510 1/1 376 444 .. 1 87 [] 39.2 9.7e-11
CP001252_3610 1/1 442 511 .. 1 87 [] 31.7 1.2e-08
CP001252_0291 1/1 208 272 .. 1 87 [] 29.7 4.6e-08

Alignments of top-scoring domains:
CP001252_0832: domain 1 of 1, from 1042 to 1107: score 105.0, E = 2.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l tel+ +q
CP001252_0 1042 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TELDKKQ-- 1077

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP001252_0 1078 ----------KNYVEKIERASQSLLSIINDILDFSKIEAG 1107

CP001252_3665: domain 1 of 1, from 721 to 786: score 97.9, E = 2.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP001252_3 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTAQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP001252_3 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP001252_1192: domain 1 of 1, from 298 to 363: score 91.6, E = 1.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP001252_1 298 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll +ind+Ld+s++eag
CP001252_1 334 ----------VDYIKTIERSATNLLGIINDILDFSKLEAG 363

CP001252_4060: domain 1 of 1, from 899 to 964: score 86.0, E = 5.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++a++g+++l++ t ls +q
CP001252_4 899 AKSAFLANMSHEIRTPMNAVLGMLQLIQY---------TSLSRQQ-- 934

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++ + +a++ll L+nd+Ld+s+i+ag
CP001252_4 935 ----------QDYVNKTQTAAKSLLGLLNDILDFSKIDAG 964

CP001252_0281: domain 1 of 1, from 561 to 626: score 79.0, E = 5.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k efla++sHE+RTP++++ g+ae L t+l+ eq
CP001252_0 561 RKAEFLAAMSHEIRTPMNGLVGMAEQLSF---------TTLGIEQ-- 596

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i + ae +l++in++Ld+s+i+ g
CP001252_0 597 ----------KQMVQIINNGAEEILQIINNILDFSKIDMG 626

CP001252_2922: domain 1 of 1, from 205 to 271: score 78.4, E = 7.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
CP001252_2 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS---------MAEPDSMN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++++r+++++++lL lsrie
CP001252_2 242 ----------VKPLALMQQQTRRMQSMVEQLLMLSRIEDA 271

CP001252_1123: domain 1 of 1, from 509 to 574: score 77.4, E = 1.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++ lL ++l++ q
CP001252_1 509 AKSQFLATMSHEIRTPLNGLLGTLTLLGH---------SDLPPAQ-- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ +nd+Ld+sr+e+g
CP001252_1 545 ----------QQMLALSQYSGTLLQTVLNDILDFSRLEQG 574

CP001252_0166: domain 1 of 1, from 704 to 770: score 73.3, E = 2.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++aI+g++el+l+ +t+ ++
CP001252_0 704 AKSTFLATMSHEIRTPMNAIIGMLELALK--------RTKSQHFDI- 741

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++a+ ll+Li d+Ld++rieag
CP001252_0 742 -----------NSIKVAYDSANGLLELIGDILDIARIEAG 770

CP001252_0056: domain 1 of 1, from 127 to 195: score 65.0, E = 4.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+ q+
CP001252_0 127 LRNSILLSVSHDLRTPLSTIIGTLTTLKEYM-------PKLSASQK- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++ e++rl + i++lL+ +++++g
CP001252_0 166 ----------TELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP001252_0255: domain 1 of 1, from 126 to 191: score 59.3, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP001252_0 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAL- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i+++a+rl++L+++lL r +
CP001252_0 162 ----------KEFTTLIIEQADRLRNLVDRLLGPQRPTQH 191

CP001252_1397: domain 1 of 1, from 136 to 202: score 53.8, E = 7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya+ L ++ls+ +
CP001252_1 136 ALGKMVATLAHQVRTPLSAALLYASNLAS---------PKLSDAAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ + ++ l+r++nd+L +++ ++
CP001252_1 173 ----------AKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP001252_0248: domain 1 of 1, from 244 to 306: score 52.2, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + +++e+
CP001252_0 244 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTAET-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+i eae+l++Li++lL+lsr
CP001252_0 281 --------------ERIGYEAEQLEKLISELLELSRVKLS 306

CP001252_2349: domain 1 of 1, from 250 to 316: score 51.2, E = 3.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ +++q+
CP001252_2 250 RERRFSADAAHELKTPLSVIKLHQHGLES---------LIDDDPQQ- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+ + ++++ +++lL l+r ++
CP001252_2 287 ----------KFHLAAIDAGVVHMSHTVEQLLVLARVDSI 316

CP001252_2401: domain 1 of 1, from 498 to 563: score 51.0, E = 4.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ ++
CP001252_2 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDKDT-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP001252_2 534 ----------QKYVDRAQEGVSRLSMILNNMSEATRLEQS 563

CP001252_3228: domain 1 of 1, from 200 to 269: score 50.7, E = 5.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP001252_3 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +e++
CP001252_3 240 ----------QDFLDEMQLDIKEMEDLLQELLTYASLESQ 269

CP001252_4062: domain 1 of 1, from 233 to 293: score 47.2, E = 5.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e ++
CP001252_4 233 DRALLMAGISHDLRTPLTRIRLASEMMVE---------AD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++i+++ + r +++
CP001252_4 264 ----------QYLKDGIVNDIEDMDAIISQFIAYIRQDQE 293

CP001252_3438: domain 1 of 1, from 214 to 279: score 46.7, E = 7.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+L+TP++ +r+ +e+L+e ++se+ r
CP001252_3 214 DNKLLSRAVSHDLKTPIARLRFGIEALEE----------TQSEQLR- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++ r+++ +++L+ lL ++r+++
CP001252_3 250 ----------VKYFQRLNRDLDTMEDLVMTLLSYARLDEA 279

CP001252_2481: domain 1 of 1, from 786 to 852: score 46.6, E = 7.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP001252_2 786 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 822

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP001252_2 823 ----------RTTLSHVNSSLKIAGELLTDLLDISKLDSG 852

CP001252_4182: domain 1 of 1, from 472 to 539: score 46.6, E = 7.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el ++ e
CP001252_4 472 ALGELTAGIAHEINNPTAVILGNMELLRYEL-------GDNAEVV-- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP001252_4 510 ----------KEEIDLVIQQVGRISTIIRSLLQYSRPGEF 539

CP001252_3700: domain 1 of 1, from 494 to 562: score 45.6, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I +++ L e+l ++ + e +
CP001252_3 494 ELDRFAYIASHDLKSPLRGIEQLTSWLAEDL-------SDNTNENV- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP001252_3 533 ----------QKYLGLIQSRIHRMVLLLDGLLMFSRIGRV 562

CP001252_2077: domain 1 of 1, from 269 to 335: score 44.7, E = 2.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak l+++ HE+RTP++aI+gy+ +L++ +ls +q
CP001252_2 269 AKIAVLSSINHEIRTPINAILGYSRMLKK----------ALSQPQ-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++++ +a+ l + ++ L +s++eag
CP001252_2 304 --------ELDKIVDKMAWSANLLYSVAENTLNYSKAEAG 335

CP001252_1510: domain 1 of 1, from 376 to 444: score 39.2, E = 9.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l ++ ++
CP001252_1 376 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RNMQDKA-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i++ ++rl +++ ++ ++r +g
CP001252_1 415 ----------LDNIKIIIELTDRLADIVGQFKSFTRKSQG 444

CP001252_3610: domain 1 of 1, from 442 to 511: score 31.7, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a+lsHEL++PL+aI y++ ++ +l ++++ +ee
CP001252_3 442 IAGELGASLSHELNQPLAAIGHYCHGAEVRL-----QRGTSPEEL-- 481

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++e+ r +++i++l+ l + +
CP001252_3 482 ----------QSVLTLIQQEVTRADSIISRLRNLLKKRPV 511

CP001252_0291: domain 1 of 1, from 208 to 272: score 29.7, E = 4.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L ++e se
CP001252_0 208 AVRGATDNIAHDLRTPLSHIRIGLEELAS------KPSDEISEGC-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++++l+ + +L l+rie+g
CP001252_0 247 --------------AILTEELDHCLATFDAMLSLTRIEEG 272


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 3 0|=
-14 13 0|=
-13 59 3|*====
-12 192 97|======*=======
-11 459 503|================================= *
-10 671 934|================================================ *
-9 785 965|========================================================= *
-8 707 722|===================================================*
-7 538 455|================================*======
-6 329 262|==================*=====
-5 193 143|==========*===
-4 127 76|=====*====
-3 59 40|==*==
-2 29 21|=*=
-1 28 11|*=
0 16 5|*=
1 4 3|*
2 2 1|*
3 2 0|=
> 4 34 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 340.7922
P(chi-square) = 0

Total sequences searched: 4250

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: