Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

2 accessions found for Thermomicrobium roseum DSM 5159  

Data for CP001275  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001275.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001275_0263 CDS_274641-276347 74.4 2.7e-21 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001275_0263 1/1 366 415 .. 1 56 [. 74.4 2.7e-21

Alignments of top-scoring domains:
CP001275_0263: domain 1 of 1, from 366 to 415: score 74.4, E = 2.7e-21
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E HHRV+NNLQ++++LL+LQar++ ++e+ +++L+++++R++S
CP001275_0 366 ELHHRVRNNLQTVAALLSLQARRA-GPEA-----RAVLQDAVSRIRS 406

mAliHEeLY<-*
+H+ L+
CP001275_0 407 LTVVHDLLS 415


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 11 0|==
-14 31 0|====
-13 59 12|=*=====
-12 131 126|=============*=
-11 509 351|======================================*==================
-10 397 454|============================================= *
-9 293 384|================================= *
-8 205 257|======================= *
-7 114 153|============= *
-6 94 85|=========*=
-5 27 45|=== *
-4 28 24|==*=
-3 6 12|=*
-2 5 6|*
-1 8 3|*
0 1 1|*
1 1 0|=
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 317.0976
P(chi-square) = 0

Total sequences searched: 1922

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: