Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

2 accessions found for Thermomicrobium roseum DSM 5159  

Data for CP001276  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001276.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001276_0607 CDS_599618-598179 87.8 3.5e-25 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001276_0607 1/1 243 310 .. 1 87 [] 87.8 3.5e-25

Alignments of top-scoring domains:
CP001276_0607: domain 1 of 1, from 243 to 310: score 87.8, E = 3.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a++sHELRTPLt++rg++elL++ +++l+ e++
CP001276_0 243 AQRRFVADASHELRTPLTTLRGNVELLQR--------EPPLPLEEQ- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l + e+er+ rL+++lL+l+r++ag
CP001276_0 281 ----------RAILADVAAEIERMIRLVRELLTLARADAG 310


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 1 0|=
-14 4 0|==
-13 19 0|=======
-12 69 21|======*================
-11 107 111|====================================*
-10 142 206|================================================ *
-9 156 212|==================================================== *
-8 149 159|================================================== *
-7 102 100|=================================*
-6 81 57|==================*========
-5 37 31|==========*==
-4 28 16|=====*====
-3 19 8|==*====
-2 7 4|=*=
-1 9 2|*==
0 2 1|*
1 2 0|=
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 170.2832
P(chi-square) = 5.387e-32

Total sequences searched: 937

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: