Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

2 accessions found for Thermomicrobium roseum DSM 5159  

Data for CP001276  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001276.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001276_0570 CDS_565340-564093 56.5 5.3e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001276_0570 1/1 209 275 .. 1 70 [] 56.5 5.3e-17

Alignments of top-scoring domains:
CP001276_0570: domain 1 of 1, from 209 to 275: score 56.5, E = 5.3e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA +LHD v+Q +++i + + ++r d+++ pe++ +ald+i
CP001276_0 209 ERNRIAADLHDRVAQIMFGIGIEATWCR---DQPDVPEPVLRALDRI 252

relarealaevRrllgdLRpaal<-*
rela ++ aevRr++ dL ++
CP001276_0 253 RELAARGAAEVRRVVYDLAEMPV 275


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 1 0|=
-13 11 0|====
-12 19 10|===*===
-11 41 85|============== *
-10 93 199|=============================== *
-9 142 226|================================================ *
-8 101 174|================================== *
-7 111 109|====================================*
-6 113 62|====================*=================
-5 117 33|==========*============================
-4 67 17|=====*=================
-3 49 8|==*==============
-2 21 4|=*=====
-1 17 2|*=====
0 12 1|*===
1 11 0|====
2 2 0|=
3 2 0|=
4 2 0|=
5 2 0|=
6 0 0|
7 1 0|=
8 0 0|
9 0 0|
> 10 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 723.2135
P(chi-square) = 0

Total sequences searched: 937

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: