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Classification of phyla is from NCBI page
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2 accessions found for Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)  

Data for CP001277  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001277.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001277_1461 CDS_1482677-1485301 86.4 1.9e-24 1
CP001277_0142 CDS_152252-154990 70.1 8e-20 1
CP001277_0075 CDS_78664-82293 68.0 3.3e-19 1
CP001277_1362 CDS_1396444-1394612 61.1 2.8e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001277_1461 1/1 235 300 .. 1 87 [] 86.4 1.9e-24
CP001277_0142 1/1 391 456 .. 1 87 [] 70.1 8e-20
CP001277_0075 1/1 710 776 .. 1 87 [] 68.0 3.3e-19
CP001277_1362 1/1 114 179 .. 1 87 [] 61.1 2.8e-17

Alignments of top-scoring domains:
CP001277_1461: domain 1 of 1, from 235 to 300: score 86.4, E = 1.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHELRTPL++++g+a l+ t l++ q
CP001277_1 235 MKSEFLANISHELRTPLNSVIGFARQTLK---------TSLTPTQ-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++t++++a+ ll++ind+Ld+s++ a
CP001277_1 271 ----------TDYIKTMKQSAHNLLSIINDVLDFSKLNAK 300

CP001277_0142: domain 1 of 1, from 391 to 456: score 70.1, E = 8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l ++sHE+RTPL++ +g++elL+ t ls+ q
CP001277_0 391 RKSLHLTTISHEIRTPLNGALGAIELLKH---------TSLSPSQ-- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t ++++ +ll++in lLd+s ie+g
CP001277_0 427 ----------LKLLDTTQQCSASLLSIINALLDFSHIESG 456

CP001277_0075: domain 1 of 1, from 710 to 776: score 68.0, E = 3.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++aI+g++el + +++ s+++
CP001277_0 710 AKSTFLATMSHEIRTPISAIIGLLELVVT------SKEHVVSDDEP- 749

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++a++ll Li d+Ld+++ie+g
CP001277_0 750 -------------IYVAYQSAQSLLGLIGDILDMAKIESG 776

CP001277_1362: domain 1 of 1, from 114 to 179: score 61.1, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHEL TPL++I g++++Ll+ tel+++
CP001277_1 114 DQDRFISTISHELLTPLSGIVGLSHILLD---------TELNPDR-- 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ a l ++ nd++ + +ie
CP001277_1 150 ----------TQYLRTIYINAFTLIHIFNDIMNINKIERA 179


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-16 2 0|=
-15 8 0|==
-14 26 0|====
-13 92 1|*=============
-12 168 47|======*=================
-11 270 248|===================================*===
-10 372 461|====================================================== *
-9 337 476|================================================= *
-8 265 357|====================================== *
-7 228 225|================================*
-6 144 129|==================*==
-5 85 71|==========*==
-4 45 38|=====*=
-3 22 20|==*=
-2 10 10|=*
-1 9 5|*=
0 8 2|*=
1 4 1|*
2 0 0|
> 3 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 392.1577
P(chi-square) = 0

Total sequences searched: 2100

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: