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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

1 accessions found for Nautilia profundicola AmH  

Data for CP001279  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001279.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001279_1225 CDS_1170520-1173612 100.2 2e-28 1
CP001279_0286 CDS_264429-263668 62.0 1.3e-17 1
CP001279_0231 CDS_216972-215890 52.3 7.6e-15 1
CP001279_0372 CDS_346508-347635 49.8 3.9e-14 1
CP001279_1317 CDS_1264164-1265111 46.1 4.2e-13 1
CP001279_0532 CDS_493342-494967 30.6 1.1e-08 1
CP001279_0707 CDS_669968-671446 28.8 3.3e-08 1
CP001279_0124 CDS_111549-113405 27.1 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001279_1225 1/1 394 459 .. 1 87 [] 100.2 2e-28
CP001279_0286 1/1 42 108 .. 1 87 [] 62.0 1.3e-17
CP001279_0231 1/1 147 210 .. 1 87 [] 52.3 7.6e-15
CP001279_0372 1/1 174 235 .. 1 87 [] 49.8 3.9e-14
CP001279_1317 1/1 110 172 .. 1 87 [] 46.1 4.2e-13
CP001279_0532 1/1 323 393 .. 1 87 [] 30.6 1.1e-08
CP001279_0707 1/1 267 337 .. 1 87 [] 28.8 3.3e-08
CP001279_0124 1/1 407 472 .. 1 87 [] 27.1 1.1e-07

Alignments of top-scoring domains:
CP001279_1225: domain 1 of 1, from 394 to 459: score 100.2, E = 2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++elL + t+l+eeq
CP001279_1 394 AKSLFLANMSHEIRTPLNGILGFLELLNT---------TDLTEEQ-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti ++a+ ll+++n++Ld s+ie++
CP001279_1 430 ----------LDYVNTIAQSAKNLLQIVNNILDVSKIESN 459

CP001279_0286: domain 1 of 1, from 42 to 108: score 62.0, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e+++++sHE+++P++ I gy+e++l el+ + +
CP001279_0 42 SKDELISAISHEFKNPISIINGYIETILS---------NELPKDMN- 78

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i++ + rl++Li++l ++r+e++
CP001279_0 79 ----------DKFLHKIQKNSLRLSELIDRLYLITRLENE 108

CP001279_0231: domain 1 of 1, from 147 to 210: score 52.3, E = 7.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f +n+sHEL+TPLt ++g +e++l+ + e++e+
CP001279_0 147 RLKIFNSNVSHELKTPLTIMKGEIEVALM--------SNECNEDL-- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++l+e+++++++ + lL l++ ++
CP001279_0 184 -------------LKSLLNEINYINEITDKLLFLTKKDSL 210

CP001279_0372: domain 1 of 1, from 174 to 235: score 49.8, E = 3.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++ HE++TP+++I++++e+L++ + +++
CP001279_0 174 MLEDFIRDATHEMNTPISVILTNIEMLKM---------KDIESKE-- 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ +a+rl+++ d L + r+ +
CP001279_0 210 -------------LQRIEFSAKRLEKIFKD-LAFVRLNHK 235

CP001279_1317: domain 1 of 1, from 110 to 172: score 46.1, E = 4.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+HE+R+P+ +I+ +++lL++ + + e
CP001279_1 110 AMGQMAAHLAHEIRNPIGSISILISLLKK---------QCGGNEL-- 145

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le +++++ r++r+i L +s+ ++
CP001279_1 146 -------------LEEMKSSIFRIERIIKSTLLFSKGLQP 172

CP001279_0532: domain 1 of 1, from 323 to 393: score 30.6, E = 1.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+l n++H+ R PLt ++++++ L++ ++k +l+ e +
CP001279_0 323 ALGEMLGNIAHQWRHPLTRLSLLIQNLEMAYNK-----NKLDKEFL- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++l+++e++++ i+d+ + + ++
CP001279_0 364 ----------ENFQKKALSQIEYMSQTIDDFTNFFKKDTK 393

CP001279_0707: domain 1 of 1, from 267 to 337: score 28.8, E = 3.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+l++++H+ R+PL+++++ ++ L+ ++d ++ +e+++
CP001279_0 267 LMGELLSMIAHQWRQPLNVMSLIISQLKIDFD-----LGDINEKEI- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +i++ +++l++ i+d++ + r e
CP001279_0 308 ----------KKSIIKIEELIQHLSNTIDDFRKFYRREDS 337

CP001279_0124: domain 1 of 1, from 407 to 472: score 27.1, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+ + H++RTPL++I+++++lL+ + ++
CP001279_0 407 LNRRFIVDTIHQIRTPLNVIMLNTDLLKL---------EIKDKNV-- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e i+ ++ l++ +dl ls +
CP001279_0 443 ----------QDIIEEIDAAVAMLNNSYEDLAYLSSNNTA 472


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 7 0|==
-13 24 1|*===
-12 103 39|======*===========
-11 213 205|==================================*=
-10 331 380|======================================================== *
-9 346 392|==========================================================*
-8 250 294|========================================== *
-7 169 185|============================= *
-6 112 106|=================*=
-5 69 58|=========*==
-4 42 31|=====*=
-3 26 16|==*==
-2 9 8|=*
-1 6 4|*
0 5 2|*
1 1 1|*
2 4 0|=
> 3 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 133.4413
P(chi-square) = 9.265e-24

Total sequences searched: 1730

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: