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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

2 accessions found for Thauera sp. MZ1T  

Data for CP001281  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001281.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001281_1680 CDS_1947686-1950187 101.9 8.8e-29 1
CP001281_1794 CDS_2068820-2071456 97.2 1.9e-27 1
CP001281_1325 CDS_1524246-1521943 93.9 1.6e-26 1
CP001281_1307 CDS_1498054-1496264 86.8 1.6e-24 1
CP001281_1309 CDS_1502554-1499465 84.6 6.9e-24 1
CP001281_0220 CDS_262240-263556 76.1 1.8e-21 1
CP001281_1996 CDS_2321261-2324284 75.0 3.7e-21 1
CP001281_2040 CDS_2376151-2377488 71.8 3e-20 1
CP001281_1378 CDS_1584758-1586257 67.8 4e-19 1
CP001281_1889 CDS_2182853-2184397 57.7 3e-16 1
CP001281_0527 CDS_631767-630325 56.9 4.9e-16 1
CP001281_1269 CDS_1448965-1447460 56.0 9.1e-16 1
CP001281_1793 CDS_2068573-2066429 55.5 1.2e-15 1
CP001281_1878 CDS_2172807-2174051 52.0 1.2e-14 1
CP001281_0151 CDS_185307-183817 51.6 1.5e-14 1
CP001281_0340 CDS_408899-407040 51.2 2e-14 1
CP001281_1180 CDS_1359573-1358113 50.2 3.8e-14 1
CP001281_1987 CDS_2307825-2306182 46.4 4.6e-13 1
CP001281_2196 CDS_2545219-2546634 43.9 2.3e-12 1
CP001281_0362 CDS_439014-437566 42.1 7.8e-12 1
CP001281_1200 CDS_1378924-1377608 33.9 1.6e-09 1
CP001281_1420 CDS_1630302-1632539 29.4 3.1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001281_1680 1/1 174 239 .. 1 87 [] 101.9 8.8e-29
CP001281_1794 1/1 506 573 .. 1 87 [] 97.2 1.9e-27
CP001281_1325 1/1 520 588 .. 1 87 [] 93.9 1.6e-26
CP001281_1307 1/1 215 280 .. 1 87 [] 86.8 1.6e-24
CP001281_1309 1/1 503 568 .. 1 87 [] 84.6 6.9e-24
CP001281_0220 1/1 210 278 .. 1 87 [] 76.1 1.8e-21
CP001281_1996 1/1 477 542 .. 1 87 [] 75.0 3.7e-21
CP001281_2040 1/1 221 287 .. 1 87 [] 71.8 3e-20
CP001281_1378 1/1 263 328 .. 1 87 [] 67.8 4e-19
CP001281_1889 1/1 270 335 .. 1 87 [] 57.7 3e-16
CP001281_0527 1/1 255 317 .. 1 87 [] 56.9 4.9e-16
CP001281_1269 1/1 262 330 .. 1 87 [] 56.0 9.1e-16
CP001281_1793 1/1 480 555 .. 1 87 [] 55.5 1.2e-15
CP001281_1878 1/1 204 270 .. 1 87 [] 52.0 1.2e-14
CP001281_0151 1/1 269 334 .. 1 87 [] 51.6 1.5e-14
CP001281_0340 1/1 397 467 .. 1 87 [] 51.2 2e-14
CP001281_1180 1/1 264 332 .. 1 87 [] 50.2 3.8e-14
CP001281_1987 1/1 328 396 .. 1 87 [] 46.4 4.6e-13
CP001281_2196 1/1 244 303 .. 1 87 [] 43.9 2.3e-12
CP001281_0362 1/1 273 339 .. 1 87 [] 42.1 7.8e-12
CP001281_1200 1/1 233 291 .. 1 87 [] 33.9 1.6e-09
CP001281_1420 1/1 522 592 .. 1 87 [] 29.4 3.1e-08

Alignments of top-scoring domains:
CP001281_1680: domain 1 of 1, from 174 to 239: score 101.9, E = 8.8e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP+++I+g+++lLl+ ++ eq
CP001281_1 174 AKGDFLANMSHEIRTPMNGIIGMTDLLLD---------STIAGEQ-- 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl+t++++ae ll +ind+Ld+srieag
CP001281_1 210 ----------REYLQTVKSSAEALLTIINDILDFSRIEAG 239

CP001281_1794: domain 1 of 1, from 506 to 573: score 97.2, E = 1.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl+++sHELRTPL+aI+g+a+lL++ g+++lse q
CP001281_1 506 AKTEFLSSMSHELRTPLNAILGFAQLLQN-------GRQPLSERQ-- 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e i r++++ll+Lin++Ldl+rie+g
CP001281_1 544 ----------LRQVEQIARSGRHLLQLINEVLDLARIESG 573

CP001281_1325: domain 1 of 1, from 520 to 588: score 93.9, E = 1.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHELRTPL++I+g++ +Ll +l ++l++eq
CP001281_1 520 LKSAFLATMSHELRTPLNSIIGFTGILLQRLA------GPLNDEQ-- 558

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++a++ll+Lind+Ld+s+ieag
CP001281_1 559 ----------SRQLGMVQDSARHLLALINDVLDISKIEAG 588

CP001281_1307: domain 1 of 1, from 215 to 280: score 86.8, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI+g+++l+ +el++ q
CP001281_1 215 AKSSFLASMSHEIRTPLAAILGMSHLMHQ---------EELPASQ-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l++i++++++ll++in +Ldls+ieag
CP001281_1 251 ----------RERLDVIENAGRHLLSIINGILDLSKIEAG 280

CP001281_1309: domain 1 of 1, from 503 to 568: score 84.6, E = 6.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl ++sHE+RTP+++++g++++L + ls eq
CP001281_1 503 AKSEFLTTMSHEIRTPMNGVIGLLDVLSH---------SQLSTEQ-- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ +++++ae llrLi+d+Ld+srie+g
CP001281_1 539 ----------VEMVGIMRESAETLLRLIDDILDFSRIESG 568

CP001281_0220: domain 1 of 1, from 210 to 278: score 76.1, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++n+sHELRTPLt++ g++e+L ++l ++ + +++
CP001281_0 210 MRRDFVSNVSHELRTPLTVVCGFLETLIDGL-------DDFGRDEV- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ + +++ r++rLi++lL+ls +e+g
CP001281_0 249 ----------LQYLSLASEQSSRMQRLIEELLTLSALETG 278

CP001281_1996: domain 1 of 1, from 477 to 542: score 75.0, E = 3.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL++I+g++el ++ + + e
CP001281_1 477 AKTAFLGTVSHELRTPLAGILGLLELVED---------ASSTTER-- 512

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++ +a ll+L++d+Ld++rieag
CP001281_1 513 ----------KQYQAQMRAAAVLLLELLEDMLDFARIEAG 542

CP001281_2040: domain 1 of 1, from 221 to 287: score 71.8, E = 3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPL++++g +el+l e++ +++
CP001281_2 221 QLEGFNADVAHELRTPLATLIGETELALS---------RERGIPEL- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l + l++++rl +L+nd+L ls+++ g
CP001281_2 258 ----------RDVLGSNLEDLHRLASLVNDMLFLSKADRG 287

CP001281_1378: domain 1 of 1, from 263 to 328: score 67.8, E = 4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H++RTPLt++++ ++l+ e +++q+
CP001281_1 263 AQQRFIADAAHQMRTPLTGLKMQTDLAMH----------ETDPDQL- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +i ++++r +Lin+lL l+r+ea
CP001281_1 299 ----------RQSLTRIAESTDRAAHLINQLLSLARAEAS 328

CP001281_1889: domain 1 of 1, from 270 to 335: score 57.7, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++fla+++HELRTPL+++r +a+ +l ++ +++
CP001281_1 270 RERRFLAYAAHELRTPLAVLRIHAQNALQ---------APDPADR-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ + + +er r + +lL+l+r+e
CP001281_1 306 ----------EEALRLLGSGIERATRVVAQLLTLARLEPD 335

CP001281_0527: domain 1 of 1, from 255 to 317: score 56.9, E = 4.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efl +++H+LRTPL+++++ +elL+ +l+e
CP001281_0 255 RQREFLQDAAHQLRTPLAGLQMQLELLES---------RPLDEAA-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ r rL n+lL l+r+eag
CP001281_0 291 -------------RHRLRVSVARVIRLANQLLALARAEAG 317

CP001281_1269: domain 1 of 1, from 262 to 330: score 56.0, E = 9.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL +I g a++L+e + ++l+ e
CP001281_1 262 ELESFSYSVSHDLRAPLRGIGGWAQALEE------DHGAALPVEA-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl +i+ e r++ Li+dlL+l+r
CP001281_1 301 ----------QEYLARIRGECARMNLLIEDLLQLARVTRS 330

CP001281_1793: domain 1 of 1, from 480 to 555: score 55.5, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+++++HE+++PL ++gyae L++ ld + t+l+++ rl
CP001281_1 480 ALGQFASGVAHEINNPLGLVSGYAEELQALLD----QCTPLGDDRRL 522

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
L r+ l ti+++a+r+ ++ +lL +sr ++
CP001281_1 523 AQL-------RRGLATIQQQAHRCKAITANLLAFSRRQSA 555

CP001281_1878: domain 1 of 1, from 204 to 270: score 52.0, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f anlsHELRTPL++Ir ae+Ll+ d+ ls++
CP001281_1 204 RERDFNANLSHELRTPLAGIRSDAEMLLN--------DPVLSDKA-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e+i+ ++r L + lL l+r +
CP001281_1 241 ----------RRRAERIIATTDRTTTLAQSLLLLAREARP 270

CP001281_0151: domain 1 of 1, from 269 to 334: score 51.6, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fla+++H++RTPL+++ + ae l+ ++ +ee
CP001281_0 269 ARRRFLADAAHQIRTPLAVLTTQAEYGLR---------QTDPEEM-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++lr+++ +rL n++L+lsr+ea
CP001281_0 305 ----------LATFASLLRSTRAARRLANQMLTLSRAEAV 334

CP001281_0340: domain 1 of 1, from 397 to 467: score 51.2, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE+ +PL ++r+ +e+++++l g++e+++
CP001281_0 397 ELGLLAAGIAHEIHNPLGSLRLGLEAMERRL----RGRPERDDRI-- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+t+++e++r+l+ ++lL lsr +
CP001281_0 438 ----------DDYLRTMDEEIDRCLQVTQRLLMLSRPPQA 467

CP001281_1180: domain 1 of 1, from 264 to 332: score 50.2, E = 3.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sHEL+TPL+++r + lL++++ ++l +eq
CP001281_1 264 DRGRVLRHVSHELKTPLASLREGVALLEDGV------LGPLEPEQ-- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++ ++a+ l++ i++lL l +
CP001281_1 303 ----------REVTAILAHSARTLQARIEQLLRLNASQFD 332

CP001281_1987: domain 1 of 1, from 328 to 396: score 46.4, E = 4.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL aI g+a +L ee+ +++ +e +
CP001281_1 328 ELEAFSYSVSHDLRAPLRAIDGFARILVEEA-------GPRLDERQ- 366

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l +i+ aer+ Li+ l dl+ +
CP001281_1 367 ----------REQLVRIRAGAERMAILIDALIDLASVSRQ 396

CP001281_2196: domain 1 of 1, from 244 to 303: score 43.9, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la++sH+LRTPL+ +r+ +e+ + +++++
CP001281_2 244 DRALILAGVSHDLRTPLARLRLGIEM------------SGAPDDE-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ ++r+i ++Ld+ r +a+
CP001281_2 277 -------------VTAMVADIGEMDRIIGQFLDFGRGDAQ 303

CP001281_0362: domain 1 of 1, from 273 to 339: score 42.1, E = 7.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE+++PLt++++++ +L++ + ++e +
CP001281_0 273 AIGRLTAGIAHEINNPLTGMLTALNTLQR---------HGGDAERT- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ ++r + ++++ + lL ++i
CP001281_0 310 ----------ERTLSLLQRGLSQIRNTVCALLVEAKIADR 339

CP001281_1200: domain 1 of 1, from 233 to 291: score 33.9, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ la++sH+L TP+t +r+ ae+ +
CP001281_1 233 ERTRILAAISHDLQTPITRLRLRAEMVDD------------------ 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +i+++++ ++ L+ + L ++r +
CP001281_1 262 ----------EGLRARIQSDLDAMQGLVKEGLAYARSLDE 291

CP001281_1420: domain 1 of 1, from 522 to 592: score 29.4, E = 3.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++l+HEL +PLtaI+ +a++ l+ ++ ++l++e+
CP001281_1 522 QIAVMTSSLAHELSQPLTAILSNAQAGLR-----MLRAGALPAEEG- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le i + +r + i+ l+ + r +
CP001281_1 563 ----------EAILEDIVADDKRAAQVIESLRAMLRRRPT 592


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 6 0|=
-13 19 1|*==
-12 69 51|======*==
-11 159 268|==================== *
-10 362 498|============================================== *
-9 391 515|================================================= *
-8 431 385|================================================*=====
-7 292 243|==============================*======
-6 216 139|=================*=========
-5 134 76|=========*=======
-4 77 41|=====*====
-3 43 21|==*===
-2 18 11|=*=
-1 11 5|*=
0 5 3|*
1 6 1|*
2 0 0|
3 2 0|=
4 0 0|
5 0 0|
> 6 27 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 277.8927
P(chi-square) = 0

Total sequences searched: 2268

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: