Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

2 accessions found for Thauera sp. MZ1T  

Data for CP001281  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001281.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001281_0171 CDS_209990-211246 57.5 6.7e-17 1
CP001281_1268 CDS_1447350-1445896 56.6 1.2e-16 1
CP001281_0450 CDS_538094-536700 48.4 3.2e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001281_0171 1/1 221 284 .. 1 70 [] 57.5 6.7e-17
CP001281_1268 1/1 278 343 .. 1 70 [] 56.6 1.2e-16
CP001281_0450 1/1 262 330 .. 1 70 [] 48.4 3.2e-14

Alignments of top-scoring domains:
CP001281_0171: domain 1 of 1, from 221 to 284: score 57.5, E = 6.7e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+ARE HD +gQ L+a+k+++++a++ + + ++ +i
CP001281_0 221 ERRRLAREVHDQLGQLLTALKMMVHRALQGA--P----GREQDWPQI 261

relarealaevRrllgdLRpaal<-*
++ + e++a vRr+ +LRp+ l
CP001281_0 262 EAVLGEGIATVRRISAALRPPLL 284

CP001281_1268: domain 1 of 1, from 278 to 343: score 56.6, E = 1.2e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ A ELHD +gQ+L+a+kl l++ +l d+ +a ++l+++
CP001281_1 278 ERRAVAYELHDQIGQALTAVKLDLQAMTPHL--DAG--PAVARLAAA 320

relarealaevRrllgdLRpaal<-*
++ +eala+vR l +LRp++l
CP001281_1 321 IHTTEEALAQVRGLSLNLRPPQL 343

CP001281_0450: domain 1 of 1, from 262 to 330: score 48.4, E = 3.2e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe....earea
E aR+ARELHD++g L+a+kl + +++ +k p+++ + r +
CP001281_0 262 EQARLARELHDELGALLTAAKLDAAWIA-----RKLPAdtvaPMRSR 303

ldeirelarealaevRrllgdLRpaal<-*
+d++ +++++++a R ++ +LRp+ l
CP001281_0 304 FDRLLDTLNQGIALKRKVVAGLRPPLL 330


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 1 0|=
-13 14 0|==
-12 25 25|===*
-11 55 207|======== *
-10 203 482|============================= *
-9 356 547|=================================================== *
-8 304 422|============================================ *
-7 305 265|=====================================*======
-6 287 150|=====================*===================
-5 273 80|===========*===========================
-4 158 42|=====*=================
-3 101 21|==*============
-2 69 11|=*========
-1 41 5|*=====
0 27 2|*===
1 17 1|*==
2 11 0|==
3 7 0|=
4 4 0|=
5 2 0|=
6 1 0|=
7 0 0|
8 0 0|
9 1 0|=
10 0 0|
> 11 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2101.7109
P(chi-square) = 0

Total sequences searched: 2268

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: