Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

2 accessions found for Thauera sp. MZ1T  

Data for CP001282  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001282.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001282_0052 CDS_49927-51264 71.8 9.9e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001282_0052 1/1 221 287 .. 1 87 [] 71.8 9.9e-22

Alignments of top-scoring domains:
CP001282_0052: domain 1 of 1, from 221 to 287: score 71.8, E = 9.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPL++++g +el+l e++ +++
CP001282_0 221 QLEGFNADVAHELRTPLATLIGETELALS---------RERGIPEL- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l + l++++rl +L+nd+L ls+++ g
CP001282_0 258 ----------RDVLGSNLEDLHRLASLVNDMLFLSKADRG 287


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 3 1|*==
-11 11 8|=======*===
-10 11 16|=========== *
-9 15 17|=============== *
-8 13 12|===========*=
-7 10 8|=======*==
-6 7 4|===*===
-5 2 2|=*
-4 1 1|*
-3 0 0|
-2 0 0|
> -1 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 3.0568
P(chi-square) = 0.5484

Total sequences searched: 75

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: