Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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39 projects found  

4 accessions found for Cyanothece sp. PCC 8801  

Data for CP001287  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001287.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001287_1433 CDS_1563575-1560567 101.3 2.4e-28 1
CP001287_0794 CDS_857002-859536 100.7 3.5e-28 1
CP001287_1231 CDS_1322444-1319172 100.5 4.1e-28 1
CP001287_3002 CDS_3270369-3272411 96.5 5.4e-27 1
CP001287_1531 CDS_1661130-1659802 94.2 2.5e-26 1
CP001287_1103 CDS_1196061-1192480 94.1 2.6e-26 1
CP001287_1304 CDS_1404603-1409339 91.8 1.1e-25 1
CP001287_1423 CDS_1547836-1550688 91.5 1.4e-25 1
CP001287_2084 CDS_2235717-2238254 91.4 1.6e-25 1
CP001287_2016 CDS_2165276-2163585 88.2 1.2e-24 1
CP001287_3166 CDS_3452063-3454354 84.8 1.2e-23 1
CP001287_2618 CDS_2814547-2812667 78.0 9.3e-22 1
CP001287_4164 CDS_4565134-4560590 73.8 1.5e-20 1
CP001287_4051 CDS_4443924-4446410 73.8 1.5e-20 1
CP001287_3319 CDS_3613876-3612635 70.9 9.9e-20 1
CP001287_0471 CDS_494807-492732 70.4 1.4e-19 1
CP001287_2013 CDS_2158969-2161542 69.2 3.1e-19 1
CP001287_4043 CDS_4432819-4434129 68.3 5.5e-19 1
CP001287_0465 CDS_486757-487851 66.5 1.8e-18 1
CP001287_3482 CDS_3782261-3783625 66.3 2e-18 1
CP001287_1444 CDS_1570187-1571356 64.4 7.1e-18 1
CP001287_3383 CDS_3677581-3676106 64.2 7.8e-18 1
CP001287_1365 CDS_1483320-1482028 60.2 1e-16 1
CP001287_1491 CDS_1620620-1621951 52.3 1.8e-14 1
CP001287_2528 CDS_2719286-2720107 51.6 3e-14 1
CP001287_1859 CDS_2005107-2004034 51.4 3.3e-14 1
CP001287_3936 CDS_4309916-4312198 44.9 2.4e-12 1
CP001287_1261 CDS_1356917-1355742 42.3 1.2e-11 1
CP001287_0933 CDS_1016030-1017571 41.8 1.8e-11 1
CP001287_3921 CDS_4289146-4290561 41.2 2.6e-11 1
CP001287_3318 CDS_3607780-3610992 40.0 5.6e-11 1
CP001287_4167 CDS_4568320-4571820 34.6 1.9e-09 1
CP001287_2927 CDS_3196203-3194899 34.4 2.1e-09 1
CP001287_1266 CDS_1362468-1363850 30.6 2.6e-08 1
CP001287_1656 CDS_1800836-1800174 30.1 3.6e-08 1
CP001287_1432 CDS_1560580-1559456 30.0 3.9e-08 1
CP001287_3582 CDS_3924861-3923359 29.8 4.4e-08 1
CP001287_1657 CDS_1804132-1800833 27.9 1.5e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001287_1433 1/1 529 595 .. 1 87 [] 101.3 2.4e-28
CP001287_0794 1/1 378 444 .. 1 87 [] 100.7 3.5e-28
CP001287_1231 1/1 593 659 .. 1 87 [] 100.5 4.1e-28
CP001287_3002 1/1 419 487 .. 1 87 [] 96.5 5.4e-27
CP001287_1531 1/1 213 281 .. 1 87 [] 94.2 2.5e-26
CP001287_1103 1/1 697 762 .. 1 87 [] 94.1 2.6e-26
CP001287_1304 1/1 1124 1190 .. 1 87 [] 91.8 1.1e-25
CP001287_1423 1/1 286 351 .. 1 87 [] 91.5 1.4e-25
CP001287_2084 1/1 362 427 .. 1 87 [] 91.4 1.6e-25
CP001287_2016 1/1 319 386 .. 1 87 [] 88.2 1.2e-24
CP001287_3166 1/1 385 456 .. 1 87 [] 84.8 1.2e-23
CP001287_2618 1/1 393 460 .. 1 87 [] 78.0 9.3e-22
CP001287_4164 1/1 351 419 .. 1 87 [] 73.8 1.5e-20
CP001287_4051 1/1 328 396 .. 1 87 [] 73.8 1.5e-20
CP001287_3319 1/1 180 244 .. 1 87 [] 70.9 9.9e-20
CP001287_0471 1/1 435 502 .. 1 87 [] 70.4 1.4e-19
CP001287_2013 1/1 395 461 .. 1 87 [] 69.2 3.1e-19
CP001287_4043 1/1 210 277 .. 1 87 [] 68.3 5.5e-19
CP001287_0465 1/1 144 208 .. 1 87 [] 66.5 1.8e-18
CP001287_3482 1/1 223 290 .. 1 87 [] 66.3 2e-18
CP001287_1444 1/1 162 230 .. 1 87 [] 64.4 7.1e-18
CP001287_3383 1/1 278 341 .. 1 87 [] 64.2 7.8e-18
CP001287_1365 1/1 199 266 .. 1 87 [] 60.2 1e-16
CP001287_1491 1/1 220 285 .. 1 87 [] 52.3 1.8e-14
CP001287_2528 1/1 27 94 .. 1 87 [] 51.6 3e-14
CP001287_1859 1/1 131 199 .. 1 87 [] 51.4 3.3e-14
CP001287_3936 1/1 529 597 .. 1 87 [] 44.9 2.4e-12
CP001287_1261 1/1 162 234 .. 1 87 [] 42.3 1.2e-11
CP001287_0933 1/1 239 297 .. 1 77 [. 41.8 1.8e-11
CP001287_3921 1/1 246 312 .. 1 87 [] 41.2 2.6e-11
CP001287_3318 1/1 700 767 .. 1 87 [] 40.0 5.6e-11
CP001287_4167 1/1 939 1010 .. 1 87 [] 34.6 1.9e-09
CP001287_2927 1/1 181 236 .. 1 76 [. 34.4 2.1e-09
CP001287_1266 1/1 220 286 .. 1 87 [] 30.6 2.6e-08
CP001287_1656 1/1 26 58 .. 44 87 .] 30.1 3.6e-08
CP001287_1432 1/1 148 216 .. 1 87 [] 30.0 3.9e-08
CP001287_3582 1/1 276 318 .. 5 67 .. 29.8 4.4e-08
CP001287_1657 1/1 1075 1094 .. 1 20 [. 27.9 1.5e-07

Alignments of top-scoring domains:
CP001287_1433: domain 1 of 1, from 529 to 595: score 101.3, E = 2.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL+aI+g+++++ + d+ ls++q
CP001287_1 529 AKSQFLAKMSHELRTPLNAILGFTQMMNR--------DSSLSSQQ-- 565

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl +i r++e+ll+Lind+L++srieag
CP001287_1 566 ----------QEYLGIINRSGEHLLSLINDVLEMSRIEAG 595

CP001287_0794: domain 1 of 1, from 378 to 444: score 100.7, E = 3.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g+++lL d++l+eeq
CP001287_0 378 AKSQFLAHMSHELRTPLNAILGFSQLLNH--------DSTLNEEQ-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++i r++e+ll+Li+d+Ld+++ieag
CP001287_0 415 ----------QEYIDIINRSGEHLLALIQDILDMAKIEAG 444

CP001287_1231: domain 1 of 1, from 593 to 659: score 100.5, E = 4.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPL+aI+g+++++++ d +l++e+
CP001287_1 593 AKSEFLASMSHELRTPLNAILGFTQVMRR--------DRTLNPEH-- 629

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i r++e+ll+Lind+L++s+ieag
CP001287_1 630 ----------QQNLSIISRSGEHLLELINDILEMSKIEAG 659

CP001287_3002: domain 1 of 1, from 419 to 487: score 96.5, E = 5.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f++n+sHELRTPL I+ ++e+L e++ ++l+ee+r
CP001287_3 419 AKSQFISNVSHELRTPLFNIKSFIETLSEFG-------EDLTEEER- 457

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+let+ +e++rl rL+nd+Ldlsr+e+
CP001287_3 458 ----------KEFLETANHETDRLTRLVNDVLDLSRLESS 487

CP001287_1531: domain 1 of 1, from 213 to 281: score 94.2, E = 2.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+ l+++ HELRTPLt+I+g+a++L+eel+ ++l+e+q
CP001287_1 213 NKSDYLSHINHELRTPLTGILGFAKMLREELY------GPLNEKQ-- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i ++e+ll+L+nd+Ldls+iea+
CP001287_1 252 ----------KQYINGIAVSGEHLLALVNDFLDLSKIEAE 281

CP001287_1103: domain 1 of 1, from 697 to 762: score 94.1, E = 2.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g++elL+ ++
CP001287_1 697 AKSEFLANMSHEIRTPMNAILGFCELLQG---------IIDDPRS-- 732

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++i ++++ ll+Lind+Ldls+i++g
CP001287_1 733 ----------RSYLNSIASSGKILLALINDILDLSKIDSG 762

CP001287_1304: domain 1 of 1, from 1124 to 1190: score 91.8, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHELRTPL+aI+g+++lL + dt ls+ +
CP001287_1 1124 SKSIFLANMSHELRTPLNAILGFTQLLGR--------DTSLSAYH-- 1160

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i r++e+ll Li+d+Ldls+ie+g
CP001287_1 1161 ----------QERLQIINRSGEHLLGLIDDILDLSKIETG 1190

CP001287_1423: domain 1 of 1, from 286 to 351: score 91.5, E = 1.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ef+a++ HE+RTPL+a+ g++ lLl+ t+l+++q
CP001287_1 286 AKNEFMAMIGHEIRTPLNAVTGMTGLLLD---------TPLNPQQ-- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i++++e ll +in++Ld+s+iea+
CP001287_1 322 ----------EEFVNIIRSSGENLLTMINNILDFSKIEAQ 351

CP001287_2084: domain 1 of 1, from 362 to 427: score 91.4, E = 1.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL+aI+g+++lL++ ++ +
CP001287_2 362 AKSEFLANMSHEIRTPLNAIIGFSDLLQT---------LVRDYKS-- 397

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++i ++++ ll+Lind+Ldls+iea+
CP001287_2 398 ----------RSYLRSIVSSGHTLLALINDILDLSKIEAN 427

CP001287_2016: domain 1 of 1, from 319 to 386: score 88.2, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla+ HELRTPL++I+g++ l l+++ ++ s eq
CP001287_2 319 LKSDFLASTTHELRTPLNGIIGFLRLVLDGM-------ADDSQEQ-- 356

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le ++++a +ll+Lind+Ld+++ieag
CP001287_2 357 ----------QEFLEEAHKSALHLLNLINDILDIAKIEAG 386

CP001287_3166: domain 1 of 1, from 385 to 456: score 84.8, E = 1.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefl+n+sHELRTPLt I+g++ +Ll ++ a++ l+ +++
CP001287_3 385 SKSEFLSNMSHELRTPLTCIIGLSGTLLHWS----AQSKSLPLQKQ- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti++++++ll++in++L++s++eag
CP001287_3 427 ----------QQYLQTIQDSGKHLLEMINEILEYSKLEAG 456

CP001287_2618: domain 1 of 1, from 393 to 460: score 78.0, E = 9.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla+ sHELRTPL++I+g +++L+e++ s e+
CP001287_2 393 LKSEFLATTSHELRTPLNGIIGCLHILKEGY--------CDSKEEE- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ ++++a +ll +i+d+Ldl++ieag
CP001287_2 431 ----------LEFLQQAEQAAVHLLGIIDDVLDLAKIEAG 460

CP001287_4164: domain 1 of 1, from 351 to 419: score 73.8, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt +++ +e Ll+++ ++ls+ q
CP001287_4 351 AKTVFFSNVSHEFRTPLTLMLAPLEDLLADGA------DPLSPTQ-- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le+++r + rll+L+n lLd+srieag
CP001287_4 390 ----------RDRLEIAQRNSLRLLKLVNTLLDFSRIEAG 419

CP001287_4051: domain 1 of 1, from 328 to 396: score 73.8, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla +sHEL+ PLta+ g+++lL e ++ +el+ q
CP001287_4 328 LKDEFLACISHELKSPLTAVVGLSSLLGE------QKVGELNTRQ-- 366

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e i+r++++l L+ndlLdl+r+e+g
CP001287_4 367 ----------VHYAELIYRSGRQLMTLVNDLLDLTRLETG 396

CP001287_3319: domain 1 of 1, from 180 to 244: score 70.9, E = 9.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++l HELRTPLtaI++ ae+L++ l ++
CP001287_3 180 SRDRAFSDLTHELRTPLTAISLVAETLQN----------RLENPE-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ +l+e++rl +L++d Ldls+++++
CP001287_3 215 ----------RRWINQLLSETQRLIKLVEDWLDLSQLGEN 244

CP001287_0471: domain 1 of 1, from 435 to 502: score 70.4, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++a HELRTPL++I+ +e L + ++++s+e r
CP001287_0 435 TRSNLVAITGHELRTPLSTIQVCLESLAT--------EPDMSPELR- 472

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+l++aer+++L++d+L+ls++e+g
CP001287_0 473 ----------QVMLNTALQDAERMRKLVQDFLTLSQLESG 502

CP001287_2013: domain 1 of 1, from 395 to 461: score 69.2, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e+l+ + HE+RTPLt I+g+++lL + d +l+++q
CP001287_2 395 SKNELLSQIGHEFRTPLTIILGFIDLLDR--------DRTLNPQQ-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +++r++e+ll+L ++L++sr+e+
CP001287_2 432 ----------QENLAIMRRSGEYLLSLFAEILEISRLETH 461

CP001287_4043: domain 1 of 1, from 210 to 277: score 68.3, E = 5.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELR PLtaI++ ae+L++ + + l+ e+
CP001287_4 210 QLKQFTADASHELRSPLTAIKTSAEILQTHG-------DRLPRED-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+il +++++++L++dlL l+r++
CP001287_4 248 ----------LSKVEIILCATDQMSELVEDLLLLARMDGK 277

CP001287_0465: domain 1 of 1, from 144 to 208: score 66.5, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++++ HELRTPLt++rgy+e L +++ e s+e
CP001287_0 144 RRRELVSDMTHELRTPLTVVRGYLEELADNS-------IEPSPEL-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++rl+rLi+dl +ls++eag
CP001287_0 182 -------------YLKLVKETRRLERLIQDLQELSKAEAG 208

CP001287_3482: domain 1 of 1, from 223 to 290: score 66.3, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPL+aIr+++e l+ t e
CP001287_3 223 QIQQFTADAAHELRTPLAAIRATVESTLM---------TSTLVEA-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+r let+ r+++rl+ L+ dlL lsr++ +
CP001287_3 259 --------EVRNTLETLARQTQRLSTLVADLLMLSRLDCQ 290

CP001287_1444: domain 1 of 1, from 162 to 230: score 64.4, E = 7.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+++lsH++R+P+++I++ a lL++ + + l+ eq+
CP001287_1 162 LKSEFVSMLSHDFRNPMNTILLSAGLLEDSG-------DQLTREQQ- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ i+ +++ +++L++++L l +++ag
CP001287_1 201 ----------ISYFQMIRTAIKDMDQLLSEILLLGKADAG 230

CP001287_3383: domain 1 of 1, from 278 to 341: score 64.2, E = 7.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl ++ HELRTP+t Irg++el+ + + +q
CP001287_3 278 SQQNFLNDAGHELRTPITIIRGHLELMGD-----------DPQDQ-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +l+e++r+ rL++dl l+++e +
CP001287_3 312 ----------QETITLVLDELDRMARLVDDLSLLAKAERP 341

CP001287_1365: domain 1 of 1, from 199 to 266: score 60.2, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELR PLtaI++ +e++++ + + +++
CP001287_1 199 QLKQFTADASHELRGPLTAIKASIEVMQN-------HPERIHPKD-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i ++++++ +L++dlL l+r e
CP001287_1 237 ----------VRKLGAIASATNQMAHLVQDLLFLARTEGA 266

CP001287_1491: domain 1 of 1, from 220 to 285: score 52.3, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+++++HELRTPL++++ +e ++ ++ ee
CP001287_1 220 QMQQFTSDAAHELRTPLAVLQSSIEEMRL---------AKDLEEV-- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le ++r+ rl +L+ dlL +sri+++
CP001287_1 256 ----------SLNLEMMERQNFRLFSLVKDLLLISRIDQQ 285

CP001287_2528: domain 1 of 1, from 27 to 94: score 51.6, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fl sHELR PL++++g+ +l+l +l s+e++
CP001287_2 27 FKSGFLVKTSHELRSPLSSLMGLHQLILSDL--------CESPEEQ- 64

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ ++++a+ l ++i+++++ s+ie g
CP001287_2 65 ----------REFIAEAYQAAQKLMNMIDEIMTVSKIEYG 94

CP001287_1859: domain 1 of 1, from 131 to 199: score 51.4, E = 3.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+++l H+L+TPL + + +++ + +l+ + +++q
CP001287_1 131 MREDFVSTLTHDLKTPLLGAIETLKSFELGLF------GQITPKQ-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le ++r+ ++ l+L++ +Ld+ r +++
CP001287_1 170 ----------KKILEMMIRSHQSTLQLVETVLDIYRNDNE 199

CP001287_3936: domain 1 of 1, from 529 to 597: score 44.9, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ +sH+L PL+ ++ y++lL++++ +e +e++
CP001287_3 529 ELKKFAYVASHDLQEPLNQVSNYVQLLEMRY-------GESLDEDA- 567

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ + + + ++ Li+d+L +s+ +
CP001287_3 568 ----------SEFINFAVEGVSLMQTLIDDVLAYSKVDMR 597

CP001287_1261: domain 1 of 1, from 162 to 234: score 42.3, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++ la+l+H+LR PLta + ++e+L+ +++ + +r+
CP001287_1 162 FKDQVLAMLAHDLRSPLTAASIAVETLEL--------TQKQEDTERR 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
LR +++ + ++++ + ++rLi d+L+ s+ +
CP001287_1 201 AQLR------EQLYHQARKQFRVMNRLITDILQASKTMTA 234

CP001287_0933: domain 1 of 1, from 239 to 297: score 41.8, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +fl+ l EL PLt+++g++++L+ e++ + ls++q
CP001287_0 239 IKLKFLRQLVEELQAPLTSVIGMSSVLRSEVF------GSLSPKQ-- 277

peLRledpeyreyletilreaerllrLind<-*
+ey+++i+ +++++++L+ +
CP001287_0 278 ----------KEYVDIIHTSGQQMSSLVHE 297

CP001287_3921: domain 1 of 1, from 246 to 312: score 41.2, E = 2.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++fl +l+ EL TPLt I++++ lL+ e r
CP001287_3 246 LNEDFLNALARELSTPLTNIKTALRLLES---------MQHKREPR- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i+ e +r ++Lin l dl+++ +
CP001287_3 283 ----------QRYINLIKGECDRQNSLINGLQDLAQLNHR 312

CP001287_3318: domain 1 of 1, from 700 to 767: score 40.0, E = 5.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++++H+L++ Lt ++ ++lL+ ++ ++l+e +
CP001287_3 700 SIGTLASGIAHDLNNILTPLLSISQLLQLKY-------SNLDEST-- 737

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ ++r +++ +lL +s +
CP001287_3 738 ----------LRLLQILTINTQRAANIVKQLLLFSSSTET 767

CP001287_4167: domain 1 of 1, from 939 to 1010: score 34.6, E = 1.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL I g++ +L+ +l + +l ++++
CP001287_4 939 ELDSFCYSVSHDLRAPLRHIHGFVNALKQQL----MINNTLEDPKV- 980

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yle+i+++++ + +Li+ lL+lsr +
CP001287_4 981 ----------LHYLEVIENSSQKMAHLIDGLLTLSRVGRR 1010

CP001287_2927: domain 1 of 1, from 181 to 236: score 34.4, E = 2.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ l +l H+LR+PLta+r +++lLl+ + + +e+
CP001287_2 181 QERDRLDDLFHQLRNPLTALRIFSKLLLK--------RLKSDEKS-- 217

peLRledpeyreyletilreaerllrLin<-*
r ++++i+re+++l++Li+
CP001287_2 218 ----------RSIVDSIIRESDHLQELIQ 236

CP001287_1266: domain 1 of 1, from 220 to 286: score 30.6, E = 2.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
s + +s + R+PL++I++ + +L++ s+e +
CP001287_1 220 LISNIITIMSDQTRNPLASIKMGLTMLRK---------KQFSPEVL- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++++e + l+++ + +L+l ++
CP001287_1 257 ----------EQRLDILEQEWQKLNEINEKILQLKLVKSE 286

CP001287_1656: domain 1 of 1, from 26 to 58: score 30.1, E = 3.6e-08
*->eqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+q+ r le+i e+erl +Lind+Ld+++ie+g
CP001287_1 26 QQV-----------RNNLEIIVAESERLTSLINDVLDIAKIESG 58

CP001287_1432: domain 1 of 1, from 148 to 216: score 30.0, E = 3.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f +sH+L + L+ I + lL e++ +l+e+
CP001287_1 148 DLKAFSYRISHDLCNHLNIINNSTYLLIEKYA------KKLDEKA-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ +++e+ r++++i+dlL ls+ +
CP001287_1 187 ----------KSYLNLLEEEGLRMQQIIEDLLRLSQSQYI 216

CP001287_3582: domain 1 of 1, from 276 to 318: score 29.8, E = 4.4e-08
*->flanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLR
+l +l HE+RTPLt+Ir+++ lLl++ el+++
CP001287_3 276 LLQALTHEIRTPLTTIRTMTRLLLRN--------KELTPQM------ 308

ledpeyreyletilre<-*
++leti++e
CP001287_3 309 ------VKLLETIDQE 318

CP001287_1657: domain 1 of 1, from 1075 to 1094: score 27.9, E = 1.5e-07
*->akseflanlsHELRTPLtaI<-*
k++fla++sHELRTPLt++
CP001287_1 1075 IKNDFLATVSHELRTPLTSV 1094


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 5 0|=
-14 21 0|==
-13 77 3|*=====
-12 230 97|=======*==========
-11 485 504|======================================*
-10 726 936|======================================================== *
-9 745 967|==========================================================*
-8 655 724|=================================================== *
-7 481 456|===================================*=
-6 291 262|====================*==
-5 217 144|===========*=====
-4 117 77|=====*===
-3 68 40|===*==
-2 36 21|=*=
-1 26 11|*=
0 20 5|*=
1 8 3|*
2 1 1|*
3 4 0|=
4 4 0|=
5 2 0|=
6 0 0|
7 0 0|
> 8 41 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 430.8939
P(chi-square) = 0

Total sequences searched: 4260

Whole sequence top hits:
tophits_s report:
Total hits: 38
Satisfying E cutoff: 38
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 38
Satisfying E cutoff: 38
Total memory: 35K


Acknowledgements:

This research is funded by:

Developed by: