Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

4 accessions found for Cyanothece sp. PCC 8801  

Data for CP001287  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001287.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001287_0419 CDS_435680-432399 151.5 6.6e-43 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001287_0419 1/1 898 986 .. 1 94 [] 151.5 6.6e-43

Alignments of top-scoring domains:
CP001287_0419: domain 1 of 1, from 898 to 986: score 151.5, E = 6.6e-43
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQvI SLL+LQ+r+++d + +e+L+Es+nRV+S
CP001287_0 898 EIHHRVKNNLQVICSLLNLQSRSVQDGSI-----KELLQESRNRVRS 939

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
m+l+HE+LY+se++ ++++++Y++ L++nL++sy s +i Lk+ +
CP001287_0 940 MSLVHEKLYRSENIASINLADYINDLVNNLLNSYKTISTKITLKANI 986


Histogram of all scores:
score obs exp (one = represents 19 sequences)
----- --- ---
-15 4 0|=
-14 27 0|==
-13 67 26|=*==
-12 225 279|============ *
-11 1089 779|========================================*=================
-10 787 1008|========================================== *
-9 780 851|========================================== *
-8 495 571|=========================== *
-7 286 339|================ *
-6 277 188|=========*=====
-5 81 101|=====*
-4 68 53|==*=
-3 37 28|=*
-2 13 14|*
-1 14 7|*
0 6 4|*
1 1 2|*
2 1 1|*
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 325.0914
P(chi-square) = 0

Total sequences searched: 4260

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: