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Thermotogae
Classification of phyla is from NCBI page
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3 accessions found for Methylobacterium chloromethanicum CM4  

Data for CP001298  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001298.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001298_1995 CDS_2213319-2216696 95.3 1.5e-26 1
CP001298_4687 CDS_5205752-5203650 95.2 1.6e-26 1
CP001298_3665 CDS_4033075-4030346 93.8 3.9e-26 1
CP001298_4392 CDS_4861987-4864398 92.2 1.1e-25 1
CP001298_1868 CDS_2073066-2078879 89.4 6.8e-25 1
CP001298_0821 CDS_886712-885171 88.2 1.5e-24 1
CP001298_0443 CDS_468787-471147 86.3 5.1e-24 1
CP001298_2785 CDS_3065586-3066878 80.0 3.1e-22 1
CP001298_0662 CDS_705637-703697 75.6 5.6e-21 1
CP001298_2034 CDS_2257630-2255993 73.3 2.5e-20 1
CP001298_3540 CDS_3890106-3893321 71.4 8.9e-20 1
CP001298_1310 CDS_1444356-1442506 68.5 5.8e-19 1
CP001298_4691 CDS_5211663-5209135 67.2 1.3e-18 1
CP001298_0157 CDS_179112-181829 65.6 3.8e-18 1
CP001298_3199 CDS_3521250-3524078 63.0 2e-17 1
CP001298_4281 CDS_4739251-4737488 56.6 1.4e-15 1
CP001298_4227 CDS_4680351-4678000 56.5 1.5e-15 1
CP001298_0473 CDS_507564-505666 56.5 1.5e-15 1
CP001298_3205 CDS_3532016-3533914 56.5 1.5e-15 1
CP001298_0051 CDS_64874-62361 55.3 3.2e-15 1
CP001298_2079 CDS_2302950-2304293 53.5 1e-14 1
CP001298_2914 CDS_3217054-3218187 53.0 1.4e-14 1
CP001298_3756 CDS_4109920-4111974 52.6 1.9e-14 1
CP001298_3897 CDS_4287793-4289268 52.4 2.1e-14 1
CP001298_4591 CDS_5076822-5074765 51.6 3.5e-14 1
CP001298_1426 CDS_1583151-1579657 48.0 3.8e-13 1
CP001298_0342 CDS_364705-363275 47.7 4.6e-13 1
CP001298_3220 CDS_3554493-3552751 46.6 9.2e-13 1
CP001298_3311 CDS_3647609-3649210 46.1 1.3e-12 1
CP001298_1330 CDS_1471789-1469924 46.1 1.3e-12 1
CP001298_0501 CDS_539722-536453 45.9 1.4e-12 1
CP001298_0019 CDS_22160-20115 45.9 1.4e-12 1
CP001298_2917 CDS_3221499-3223898 44.6 3.4e-12 1
CP001298_0240 CDS_258288-255988 44.4 3.8e-12 1
CP001298_3662 CDS_4027739-4026192 43.4 7.2e-12 1
CP001298_2694 CDS_2981844-2979133 42.8 1.1e-11 1
CP001298_4429 CDS_4901585-4904863 41.0 3.6e-11 1
CP001298_3200 CDS_3524427-3527624 39.5 9.6e-11 1
CP001298_3151 CDS_3460802-3462679 38.6 1.7e-10 1
CP001298_0437 CDS_462601-458924 37.7 3e-10 1
CP001298_1623 CDS_1782467-1779156 37.1 4.5e-10 1
CP001298_3939 CDS_4336250-4334529 36.9 5.2e-10 1
CP001298_2936 CDS_3248262-3250130 36.9 5.2e-10 1
CP001298_5168 CDS_5768649-5771321 36.6 6.2e-10 1
CP001298_2653 CDS_2932101-2934626 35.7 1.1e-09 1
CP001298_1824 CDS_1997594-1999219 35.5 1.3e-09 1
CP001298_0558 CDS_602507-603901 35.0 1.8e-09 1
CP001298_2676 CDS_2960761-2959355 33.1 6.2e-09 1
CP001298_2268 CDS_2534735-2536516 33.0 6.5e-09 1
CP001298_0481 CDS_515218-513038 32.2 1.1e-08 1
CP001298_0999 CDS_1082976-1084310 29.3 7.5e-08 1
CP001298_2935 CDS_3246532-3248265 28.6 1.2e-07 1
CP001298_4344 CDS_4807690-4808943 27.5 2.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001298_1995 1/1 589 655 .. 1 87 [] 95.3 1.5e-26
CP001298_4687 1/1 177 242 .. 1 87 [] 95.2 1.6e-26
CP001298_3665 1/1 272 337 .. 1 87 [] 93.8 3.9e-26
CP001298_4392 1/1 287 355 .. 1 87 [] 92.2 1.1e-25
CP001298_1868 1/1 1247 1315 .. 1 87 [] 89.4 6.8e-25
CP001298_0821 1/1 257 326 .. 1 87 [] 88.2 1.5e-24
CP001298_0443 1/1 524 593 .. 1 87 [] 86.3 5.1e-24
CP001298_2785 1/1 184 251 .. 1 87 [] 80.0 3.1e-22
CP001298_0662 1/1 350 419 .. 1 87 [] 75.6 5.6e-21
CP001298_2034 1/1 298 368 .. 1 87 [] 73.3 2.5e-20
CP001298_3540 1/1 607 673 .. 1 87 [] 71.4 8.9e-20
CP001298_1310 1/1 366 431 .. 1 87 [] 68.5 5.8e-19
CP001298_4691 1/1 606 674 .. 1 87 [] 67.2 1.3e-18
CP001298_0157 1/1 672 740 .. 1 87 [] 65.6 3.8e-18
CP001298_3199 1/1 575 641 .. 1 87 [] 63.0 2e-17
CP001298_4281 1/1 208 274 .. 1 87 [] 56.6 1.4e-15
CP001298_4227 1/1 409 475 .. 1 87 [] 56.5 1.5e-15
CP001298_0473 1/1 260 326 .. 1 87 [] 56.5 1.5e-15
CP001298_3205 1/1 260 326 .. 1 87 [] 56.5 1.5e-15
CP001298_0051 1/1 466 532 .. 1 87 [] 55.3 3.2e-15
CP001298_2079 1/1 89 154 .. 1 87 [] 53.5 1e-14
CP001298_2914 1/1 139 203 .. 1 87 [] 53.0 1.4e-14
CP001298_3756 1/1 311 377 .. 1 87 [] 52.6 1.9e-14
CP001298_3897 1/1 265 323 .. 1 87 [] 52.4 2.1e-14
CP001298_4591 1/1 316 381 .. 1 87 [] 51.6 3.5e-14
CP001298_1426 1/1 802 868 .. 1 87 [] 48.0 3.8e-13
CP001298_0342 1/1 250 316 .. 1 87 [] 47.7 4.6e-13
CP001298_3220 1/1 211 276 .. 1 87 [] 46.6 9.2e-13
CP001298_3311 1/1 162 232 .. 1 87 [] 46.1 1.3e-12
CP001298_1330 1/1 382 450 .. 1 87 [] 46.1 1.3e-12
CP001298_0501 1/1 714 782 .. 1 87 [] 45.9 1.4e-12
CP001298_0019 1/1 303 369 .. 1 87 [] 45.9 1.4e-12
CP001298_2917 1/1 518 589 .. 1 87 [] 44.6 3.4e-12
CP001298_0240 1/1 386 452 .. 1 87 [] 44.4 3.8e-12
CP001298_3662 1/1 289 360 .. 1 87 [] 43.4 7.2e-12
CP001298_2694 1/1 489 555 .. 1 87 [] 42.8 1.1e-11
CP001298_4429 1/1 719 787 .. 1 87 [] 41.0 3.6e-11
CP001298_3200 1/1 692 760 .. 1 87 [] 39.5 9.6e-11
CP001298_3151 1/1 387 455 .. 1 87 [] 38.6 1.7e-10
CP001298_0437 1/1 852 920 .. 1 87 [] 37.7 3e-10
CP001298_1623 1/1 730 798 .. 1 87 [] 37.1 4.5e-10
CP001298_3939 1/1 191 259 .. 1 87 [] 36.9 5.2e-10
CP001298_2936 1/1 261 327 .. 1 87 [] 36.9 5.2e-10
CP001298_5168 1/1 518 586 .. 1 87 [] 36.6 6.2e-10
CP001298_2653 1/1 615 684 .. 1 87 [] 35.7 1.1e-09
CP001298_1824 1/1 163 233 .. 1 87 [] 35.5 1.3e-09
CP001298_0558 1/1 209 277 .. 1 87 [] 35.0 1.8e-09
CP001298_2676 1/1 265 323 .. 1 87 [] 33.1 6.2e-09
CP001298_2268 1/1 354 431 .. 1 87 [] 33.0 6.5e-09
CP001298_0481 1/1 336 402 .. 1 87 [] 32.2 1.1e-08
CP001298_0999 1/1 235 293 .. 1 87 [] 29.3 7.5e-08
CP001298_2935 1/1 348 426 .. 1 87 [] 28.6 1.2e-07
CP001298_4344 1/1 171 237 .. 1 87 [] 27.5 2.4e-07

Alignments of top-scoring domains:
CP001298_1995: domain 1 of 1, from 589 to 655: score 95.3, E = 1.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTPL++I+gya+lLl+ + + ++e+
CP001298_1 589 AKSEFLAAMSHEIRTPLNGILGYADLLLD--------RRDHDPED-- 625

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i+ ++e+ll +nd+Ld s+ieag
CP001298_1 626 ----------QRRLELIRVSGESLLTVVNDVLDVSKIEAG 655

CP001298_4687: domain 1 of 1, from 177 to 242: score 95.2, E = 1.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL++I+g+a+lLl+ t l++eq
CP001298_4 177 AKSRFLATVSHELRTPLNGILGMADLLLD---------TRLDPEQ-- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e + +++ ll L++ +Ld+srieag
CP001298_4 213 ----------RTYVEAFRTSGKALLGLVDGILDFSRIEAG 242

CP001298_3665: domain 1 of 1, from 272 to 337: score 93.8, E = 3.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++ +aelL ++l++ q
CP001298_3 272 AKSVFLATMSHEIRTPMNGMLVMAELLAS---------ADLPPRQ-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++i r++++ll++ind+Ld+++ eag
CP001298_3 308 ----------QRYAQVIARSGQSLLAIINDILDFAKVEAG 337

CP001298_4392: domain 1 of 1, from 287 to 355: score 92.2, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+a++gy+e+L eel ++l+ ++
CP001298_4 287 AKSQFLANMSHELRTPLSAVIGYSEMLGEEL-------EDLGQAEL- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+++a++ll Lind+Ld+s+ieag
CP001298_4 326 ----------LPDLRKIESSARHLLGLINDVLDISKIEAG 355

CP001298_1868: domain 1 of 1, from 1247 to 1315: score 89.4, E = 6.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL++++ +++lL e +d++l+++q
CP001298_1 1247 YKSQFLANMSHELRTPLNSLLILSKLLSE------NRDGNLTDKQ-- 1285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +ti ++ ll+Lind+Ldls+ie+g
CP001298_1 1286 ----------REFAKTINAAGTDLLSLINDILDLSKIESG 1315

CP001298_0821: domain 1 of 1, from 257 to 326: score 88.2, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++++e++ ++ ++
CP001298_0 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVF------GAHVAPA-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey i++++ +ll+Lin++Ldlsrieag
CP001298_0 296 ---------YREYATDIHDSGMHLLNLINEILDLSRIEAG 326

CP001298_0443: domain 1 of 1, from 524 to 593: score 86.3, E = 5.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g+ael++ e++ + l+++
CP001298_0 524 AKSEFLANMSHELRTPLNAIMGFAELMESEVY------GSLGSPR-- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++y + i++++ +ll+ i+d+L +sriea
CP001298_0 563 ---------YADYCRDIQQSGTYLLSVIDDILHMSRIEAK 593

CP001298_2785: domain 1 of 1, from 184 to 251: score 80.0, E = 3.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++e+L+ +++++ ++
CP001298_2 184 MRVDFVANASHELRTPLAALLGFIETLQG---------PARDDARAR 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a+r+ Li+dlL lsrie
CP001298_2 222 ----------EQFLGIMRTQAQRMTGLIDDLLSLSRIELH 251

CP001298_0662: domain 1 of 1, from 350 to 419: score 75.6, E = 5.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fla++sHELRTPL+aI+g++++L e+ ls+e
CP001298_0 350 VKTHFLATVSHELRTPLNAIIGFSDVLGGEGA------VSLSPERS- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey +i +++++ll+ +n lLd+sri+ g
CP001298_0 390 ----------REYAGIIAQSGRHLLDVVNTLLDISRIRGG 419

CP001298_2034: domain 1 of 1, from 298 to 368: score 73.3, E = 2.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+I+g ++l+++ ++e+ + +
CP001298_2 298 SRRRFFADVSHELRTPLTVILGECDLAQR--------SAERAAGRTV 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ti++ a+rl r ++dlL +r e+g
CP001298_2 337 DY--------GPVFTTIRKRAQRLKRRVEDLLRVARSESG 368

CP001298_3540: domain 1 of 1, from 607 to 673: score 71.4, E = 8.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL+a++gya+lL+ d+ +e+
CP001298_3 607 AKSRYVVGISHELRTPLNAVLGYAQLLEG--------DPSIPEPR-- 643

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++i+r+a++l+ Li+ lLd+sr+eag
CP001298_3 644 ----------RNGIRVIRRSAQHLSGLIDGLLDISRMEAG 673

CP001298_1310: domain 1 of 1, from 366 to 431: score 68.5, E = 5.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++++e r
CP001298_1 366 AIESFAADVSHELKNPLTSLRSAVETLPL----------AKTDESR- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+++++rl+rLi+d+ d sr++a+
CP001298_1 402 ----------GRLMQIIQHDVKRLDRLISDISDASRLDAE 431

CP001298_4691: domain 1 of 1, from 606 to 674: score 67.2, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++s ELR PLt I+g+++lL +e ++l+e q
CP001298_4 606 LRDTFVHHVSYELRSPLTNIIGFTQLLGDET------VGALNERQ-- 644

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey e i r++ ll +ind+Ldl+ i+ag
CP001298_4 645 ----------REYSEHIMRSSAALLVIINDILDLASIDAG 674

CP001298_0157: domain 1 of 1, from 672 to 740: score 65.6, E = 3.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l ++sH+LRTPL++++g+a++L++ d++l+ e +
CP001298_0 672 LARALLTSISHDLRTPLASVLGAASTLRD-------LDGALPVEAK- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti++e+erl+r i +lLd++r+eag
CP001298_0 711 ----------AELLTTIIEESERLNRFIVNLLDMTRLEAG 740

CP001298_3199: domain 1 of 1, from 575 to 641: score 63.0, E = 2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+Irg+a++L + ++lsee r
CP001298_3 575 AIGQLTGGVAHDFNNLLTVIRGAAQMLCR---------PTLSEERR- 611

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y e i + a+r +L ++lL +sr +a
CP001298_3 612 ----------QRYAEAISETADRAAKLTSQLLAFSRRQAL 641

CP001298_4281: domain 1 of 1, from 208 to 274: score 56.6, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ ++lL++ ++l ee r
CP001298_4 208 AVGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PDLAEERR- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + + r +L +lL ++r +a
CP001298_4 245 ----------RRYVDAISDTVARAAKLTGQLLAFARRQAL 274

CP001298_4227: domain 1 of 1, from 409 to 475: score 56.5, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir +e L++ ++l +e +
CP001298_4 409 AVGQLTGGVAHDFNNLLTIIRSSVEFLRR---------PDLAPERK- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ + + ++r +L +lL ++r +a
CP001298_4 446 ----------RRYLDAVSDTVDRAAKLTGQLLAFARRQAL 475

CP001298_0473: domain 1 of 1, from 260 to 326: score 56.5, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ ++lL++ ++l +e r
CP001298_0 260 AVGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PDLAPERR- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ i + ++r +L +lL ++r ++
CP001298_0 297 ----------ERYVAAISDTVDRAAKLTGQLLAFARRQSL 326

CP001298_3205: domain 1 of 1, from 260 to 326: score 56.5, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ ++lL++ ++l +e r
CP001298_3 260 AVGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PDLAPERR- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ i + ++r +L +lL ++r ++
CP001298_3 297 ----------ERYVAAISDTVDRAAKLTGQLLAFARRQSL 326

CP001298_0051: domain 1 of 1, from 466 to 532: score 55.3, E = 3.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir +e L++ ++l ee +
CP001298_0 466 AIGQLTGGVAHDFNNLLTIIRSSVEFLRR---------PDLAEERK- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ + + ++r +L ++lL ++r ++
CP001298_0 503 ----------RRYLNAVSDTVDRAAKLTSQLLAFARRQTL 532

CP001298_2079: domain 1 of 1, from 89 to 154: score 53.5, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+ +++L + + ++e
CP001298_2 89 SKTRFLAAASHDLLQPLNAARLSLSALTD---------LAPGPEA-- 124

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++r +e +++Li l d+s+++ag
CP001298_2 125 ----------QGIARQVERGLETIEDLIKALIDISKLDAG 154

CP001298_2914: domain 1 of 1, from 139 to 203: score 53.0, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+l+HE+++PL++Irg+a+lL+ e +ee+
CP001298_2 139 SMVALGAMLAHEIKNPLAGIRGAAQLLEQ----------ESDEED-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ r+++++ + +
CP001298_2 174 ----------RLLTRLICDESDRIVRIVERMELFGDERPV 203

CP001298_3756: domain 1 of 1, from 311 to 377: score 52.6, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ Lt+I+ ++lL++ ++l e+ r
CP001298_3 311 VIGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PDLAEDRR- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e i + ++r +L +lL ++r ++
CP001298_3 348 ----------SRYIEAISNTVDRAAKLTGQLLAFARRQTL 377

CP001298_3897: domain 1 of 1, from 265 to 323: score 52.4, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +r+ ae +++
CP001298_3 265 DRTQMLAAISHDLRTPITRLRLRAEFIED------------------ 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e lr++++++ L++ L + r ++g
CP001298_3 294 ----------ERAREMTLRDLDQMNGLVESALSYVRDGQG 323

CP001298_4591: domain 1 of 1, from 316 to 381: score 51.6, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +I+g++e+L + ++ +
CP001298_4 316 ALGRMTGGVAHDFNNLLMVILGNLEMLGR---------RNQEPRL-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ i+++aer +L ++lL +sr +a
CP001298_4 352 ----------ERYVTAIRKAAERGTHLTRELLAFSRGQAS 381

CP001298_1426: domain 1 of 1, from 802 to 868: score 48.0, E = 3.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt I+g +++L++ l+ e
CP001298_1 802 AMGQLTGGVAHDFNNLLTPIIGSLDMLQR---------KQLGNERE- 838

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + ++aer L+++lL ++r +
CP001298_1 839 ----------QRLIAGAMQSAERAKTLVQRLLAFARRQPL 868

CP001298_0342: domain 1 of 1, from 250 to 316: score 47.7, E = 4.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e n++H+L+TPLt +r a+ +l+ t+ ++e +
CP001298_0 250 GMREVSDNIAHDLKTPLTRLRNRADEALR---------TAETPEAL- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e ++++++ l r n lL+++r+eag
CP001298_0 287 ----------RRAMEGVIEDSDGLIRVFNALLTIARLEAG 316

CP001298_3220: domain 1 of 1, from 211 to 276: score 46.6, E = 9.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ +++H++++ L +I+g++e+L + ++ +
CP001298_3 211 VLGRMTGGVAHDFNNLLMVILGNLEMLGR---------RNQESRL-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ i+++aer +L ++lL +sr +
CP001298_3 247 ----------ERYVTAIRKAAERGTHLTRELLAFSRGQGS 276

CP001298_3311: domain 1 of 1, from 162 to 232: score 46.1, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+gya+ L ++ld +++++ +
CP001298_3 162 AIGRLTGGIAHDFNNLLQVILGYADSLATNLD-----RPDADRGRM- 202

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+++aer + L ++lL ++r +
CP001298_3 203 ----------GRAVGNIREAAERASTLTQQLLSFARKQRL 232

CP001298_1330: domain 1 of 1, from 382 to 450: score 46.1, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a++ HEL++PL+a+rg+a+ + ++l ++ + +e
CP001298_1 382 TLGQMAAGITHELNQPLAAMRGLADNASAFL------RQGREAEA-- 420

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i + ++rl ++ +l+ +sr
CP001298_1 421 ----------AANLTRIVSLVDRLGKITGQLRSFSRRSGT 450

CP001298_0501: domain 1 of 1, from 714 to 782: score 45.9, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ LtaI+g +elL+++l ++ + ++
CP001298_0 714 AVGQLTGGLAHDFNNLLTAISGSLELLQTRL------RQGRLSDL-- 752

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ ++ +++r +L +lL +sr ++
CP001298_0 753 ----------DRYINAAQGAVRRAAALTHRLLAFSRRQTL 782

CP001298_0019: domain 1 of 1, from 303 to 369: score 45.9, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g ++++l+ ++++++
CP001298_0 303 AIGQLTGGVAHDFNNLLTVIVGGLDMMLR--------RPDQPDRV-- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e + +a+r ++L ++lL +sr +
CP001298_0 340 ----------KRLAEAAMGAARRGEQLTQQLLAFSRRQML 369

CP001298_2917: domain 1 of 1, from 518 to 589: score 44.6, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ g +++++
CP001298_2 518 AWADVARRIAHEIKNPLTPIQLSAERIRRKY-----GKVITTDKDV- 558

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ti r+++ + r+++++ ++r+ +
CP001298_2 559 ---------FEQCTATIVRQVDEIKRMVDEFSSFARMPKP 589

CP001298_0240: domain 1 of 1, from 386 to 452: score 44.4, E = 3.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++++g+++lL++ l+++ rl
CP001298_0 386 AVGRLTGGIAHDFNNLLAVVIGNLDLLRK----------RLPDDPRL 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e +++ aer +L +++L ++r ++
CP001298_0 423 ----------TRLVEHAIQGAERGASLTQRMLSFARRQSL 452

CP001298_3662: domain 1 of 1, from 289 to 360: score 43.4, E = 7.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++ +l+HEL++PL aI y+ +++ l ++ ++e+++
CP001298_3 289 AMGEMATTLAHELNQPLGAITNYTNGCRRLL-------AHPDPETIA 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e l+++ ++a r +++i +l+++ ++
CP001298_3 329 RA--------QEVLDKAAEQALRARQIIARLREFVARGET 360

CP001298_2694: domain 1 of 1, from 489 to 555: score 42.8, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L aI+gy++lLl+ ++++ +++
CP001298_2 489 TVGQLAGGIAHDFNNVLQAIIGYSDLLLA---------SHRPTDHA- 525

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r +L+++lL +sr ++
CP001298_2 526 ----------FQDIMQIKQNANRAASLVRQLLAFSRRQTL 555

CP001298_4429: domain 1 of 1, from 719 to 787: score 41.0, E = 3.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ Lt+I g +elL+++l ++ r+
CP001298_4 719 AVGQLTGGLAHDFNNLLTGITGSLELLQTRL-----------AQGRI 754

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +y++ ++ +a+r +L +lL +sr ++
CP001298_4 755 TEI-------DRYVNAAQGAAKRAAALTHRLLAFSRRQTL 787

CP001298_3200: domain 1 of 1, from 692 to 760: score 39.5, E = 9.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g ++++++ + + +++
CP001298_3 692 AVGQLTGGIAHDFNNLLTGIVGSLDMMQT------RIAQGRTDTI-- 730

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + + ++a+r +L +lL ++r +
CP001298_3 731 ----------ERYAKAAMSSANRAAALTHRLLAFARRQPL 760

CP001298_3151: domain 1 of 1, from 387 to 455: score 38.6, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++HE+++PL+aIr ya+ + e++
CP001298_3 387 ALGQFAASMAHEINQPLAAIRSYADNTAILV-------RRGRVEDA- 425

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i r +er+ L ++l ++r +g
CP001298_3 426 ----------AENVSAIGRLTERIGTLTRQLKGFARRASG 455

CP001298_0437: domain 1 of 1, from 852 to 920: score 37.7, E = 3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g ++l++++ ++ r+
CP001298_0 852 AVGQLTGGIAHDFNNLLTGIIGSLDLMQTRI-----------AQGRI 887

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++y +l +a+r +L +lL ++r +
CP001298_0 888 DTL-------ERYAGAALTSAHRAASLTHRLLAFARRQPL 920

CP001298_1623: domain 1 of 1, from 730 to 798: score 37.1, E = 4.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+++ +++ + +
CP001298_1 730 AVGQLTGGLAHDFNNLLAGISGSLELMQT------RISQGRLKDV-- 768

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++ +a+r +L +lL +sr ++
CP001298_1 769 ----------DRYMGAAQGAAKRAAALTHRLLAFSRRQTL 798

CP001298_3939: domain 1 of 1, from 191 to 259: score 36.9, E = 5.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+++++ + + +
CP001298_3 191 AVGQLTGGLAHDFNNLLAGISGSLELMQTRM------LQGRLTDV-- 229

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++ +a+r +L +lL +sr ++
CP001298_3 230 ----------DRYMTAAQGAAKRAAALTHRLLAFSRRQTL 259

CP001298_2936: domain 1 of 1, from 261 to 327: score 36.9, E = 5.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ LtaI+g +el ++ + +
CP001298_2 261 ALGTLAGGIAHDFNNLLTAILGSLELVGP---------KIADQPRV- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + +a+r ++L +lL +sr
CP001298_2 298 ----------KRLVDNATGAAQRGSALTKRLLSFSRSNDA 327

CP001298_5168: domain 1 of 1, from 518 to 586: score 36.6, E = 6.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el++++ + + ++ +
CP001298_5 518 AVGQLTGGLAHDFNNLLAGISGSLELMQTRI-----QQGRFNDVE-- 557

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++ +a+r +L +lL +sr ++
CP001298_5 558 -----------RYMAAAQGAAKRAAALTHRLLAFSRRQTL 586

CP001298_2653: domain 1 of 1, from 615 to 684: score 35.7, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k la +s E+R L+aI+g+++++l + + + +++e +
CP001298_2 615 WKANALARVSREIRPSLNAILGLTDMMLSDRF------DRADAERL- 654

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ ++ ++ r+ +Li+dl+dl+ i+ag
CP001298_2 655 ----------EAYLREVRLSGGRIAALIDDLRDLAEIQAG 684

CP001298_1824: domain 1 of 1, from 163 to 233: score 35.5, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H++++ L +++g+ e++l+ l+ ++l+ +
CP001298_1 163 SLGQLTGGIAHDFNNLLQVVSGHNEVMLA-----LLDHPTLDVSRM- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e ++ +++r +L +lL +sr +
CP001298_1 204 ----------RRAGEAVRAATDRAAKLTHQLLAFSRKQRL 233

CP001298_0558: domain 1 of 1, from 209 to 277: score 35.0, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL +I++ a+ L ++l ++ ++ +
CP001298_0 209 QLDGLAAAAAHELGTPLGTIMLVAKELDRQL-------GPTASPAI- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ ++++++r++ +++ l + ++
CP001298_0 248 ----------AEDLSLLRDQVDRCRGILSKLTSMGEENEE 277

CP001298_2676: domain 1 of 1, from 265 to 323: score 33.1, E = 6.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l ++sH+LRT +t ++ + l +
CP001298_2 265 QRTAMLNGVSHDLRTIITRFKLSLALVEQ------------------ 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++r+++ ++r+++ L ++r ++
CP001298_2 294 ----------TPEVEDLQRDVDEMSRMLEGYLAFARGDSA 323

CP001298_2268: domain 1 of 1, from 354 to 431: score 33.0, E = 6.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
k+e l +++H+L++PL++I+g +e+L + + + +++s ++
CP001298_2 354 LKTEILGTIAHDLKNPLSVILGRSEMLTD----LiGLDQGDASGAEK 396

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +e i+ +a rl ++i+ l+ + +a
CP001298_2 397 AQAA------MLTQVEHIRASATRLIDMIDSLMADAMNDAL 431

CP001298_0481: domain 1 of 1, from 336 to 402: score 32.2, E = 1.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+g++e ++ +l+ + +l
CP001298_0 336 AIGQLTGGIAHDFNNLLQVILGNLEFVRA----------KLDGDAKL 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e++ +a+r L +lL ++r +
CP001298_0 373 ----------QTRIERAAWAAQRGATLTGQLLAFARKQPL 402

CP001298_0999: domain 1 of 1, from 235 to 293: score 29.3, E = 7.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a++sH+LRTP++ +r+ ++ ++
CP001298_0 235 ERTLAFAAVSHDLRTPIARLRLRLDRVED------------------ 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ ++++++ L + r +a
CP001298_0 264 ----------VDERRAMAADLDEMQAMVEATLAYLRGDAD 293

CP001298_2935: domain 1 of 1, from 348 to 426: score 28.6, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE+++PL+ I+++ + ++ l ++l++++ +
CP001298_2 348 SLGELVAGIAHEINNPLAFILAHQGTVERLL-------GDLPPPD-A 386

peLR.....ledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+ + + r+ + +++ + r+++L+ +l+ +sr+++g
CP001298_2 387 PEGQralmkA-----RDRVGSMRLGLTRIQDLVLNLRKFSRLDEG 426

CP001298_4344: domain 1 of 1, from 171 to 237: score 27.5, E = 2.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++++++++ +++l +e+s+ ++
CP001298_4 171 AIGQLTGGVAHDFNNLLNVVLLNLDRVERGL-------PEASPLRTR 210

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + + aer + lL ++r +
CP001298_4 211 -------------LRDAVKGAERAATMTHKLLAFARRQPL 237


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 1 0|=
-14 18 0|==
-13 68 3|*===
-12 262 118|======*=========
-11 467 613|============================ *
-10 858 1137|=================================================== *
-9 989 1174|==========================================================*
-8 886 879|===================================================*=
-7 661 554|================================*======
-6 393 318|==================*=====
-5 214 175|==========*==
-4 142 93|=====*===
-3 66 49|==*=
-2 34 25|=*
-1 20 13|*=
0 17 7|*
1 6 3|*
2 4 1|*
> 3 67 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 404.1281
P(chi-square) = 0

Total sequences searched: 5173

Whole sequence top hits:
tophits_s report:
Total hits: 53
Satisfying E cutoff: 53
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 53
Satisfying E cutoff: 53
Total memory: 42K


Acknowledgements:

This research is funded by:

Developed by: