hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001299.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001299_0095 CDS_127356-125326 52.7 1e-15 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001299_0095 1/1 452 519 .. 1 87 [] 52.7 1e-15
Alignments of top-scoring domains:
CP001299_0095: domain 1 of 1, from 452 to 519: score 52.7, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e +a+++HE+++P+++I+g++e+++e l ++++ee
CP001299_0 452 SIGEITAGVAHEINNPIAVIQGNLEVAREVL-------GPAGEEV-- 489
peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i+++++r + ++ +lL+++r ++
CP001299_0 490 ----------RTEFDLIDQQVHRVNMIVTRLLQFARPDEY 519
Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 2 0|=
-12 13 6|==*====
-11 31 36|================ *
-10 36 67|================== *
-9 60 69|============================== *
-8 55 52|=========================*==
-7 30 32|===============*
-6 30 18|========*======
-5 25 10|====*========
-4 11 5|==*===
-3 1 2|*
-2 5 1|*==
-1 2 0|=
0 2 0|=
> 1 3 -|==
% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 54.8505
P(chi-square) = 4.72e-09
Total sequences searched: 306
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
