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Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

2 accessions found for Rhodobacter capsulatus SB 1003  

Data for CP001312  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001312.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001312_1381 CDS_1507743-1509047 35.7 2.6e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001312_1381 1/1 240 303 .. 1 70 [] 35.7 2.6e-10

Alignments of top-scoring domains:
CP001312_1381: domain 1 of 1, from 240 to 303: score 35.7, E = 2.6e-10
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ +ARELHD++g L++++++++ + ++dpe+a++++ i
CP001312_1 240 ERKSLARELHDELGPCLFSLSVMADQL------RTDPERAAARAGDI 280

relarealaevRrllgdLRpaal<-*
l+++ Rr+l +LRpa+
CP001312_1 281 DMLVSRIRVTNRRILDTLRPATV 303


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 5 0|=
-13 35 0|====
-12 61 39|===*===
-11 137 320|============== *
-10 354 742|==================================== *
-9 551 843|======================================================== *
-8 513 650|==================================================== *
-7 540 408|========================================*=============
-6 413 231|=======================*==================
-5 343 124|============*======================
-4 209 64|======*==============
-3 112 33|===*========
-2 80 17|=*======
-1 55 8|*=====
0 26 4|*==
1 20 2|*=
2 16 1|*=
3 8 0|=
4 5 0|=
5 1 0|=
6 3 0|=
7 1 0|=
8 0 0|
9 0 0|
10 2 0|=
11 1 0|=
> 12 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2010.0778
P(chi-square) = 0

Total sequences searched: 3493

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: