Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

1 accessions found for Chloroflexus aggregans DSM 9485  

Data for CP001337  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001337.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001337_1318 CDS_1688175-1689323 139.2 1.8e-39 1
CP001337_3514 CDS_4411951-4413951 73.3 1e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001337_1318 1/1 185 269 .. 1 94 [] 139.2 1.8e-39
CP001337_3514 1/1 463 549 .. 1 94 [] 73.3 1e-20

Alignments of top-scoring domains:
CP001337_1318: domain 1 of 1, from 185 to 269: score 139.2, E = 1.8e-39
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ++SSLLrLQa+ ++de v +a ++sqnR+++
CP001337_1 185 EVHHRVKNNLQIVSSLLRLQAEHISDERV-----SAAVHDSQNRIRA 226

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
Al+HE+LY+se+l +d++eYl++++ + ++s + +++ i+ l
CP001337_1 227 LALVHEQLYRSESLAHIDIGEYLQNIATSVWRSLSIRGSPIR----L 269

CP001337_3514: domain 1 of 1, from 463 to 549: score 73.3, E = 1e-20
*->EIHHRVKNNLQvISSLLrLQarkfk..deevikdEVleaLrEsqnRV
E+HHRV+NNLQ+I++LL +Q r+ ++ ++ + +aLrEs R+
CP001337_3 463 EMHHRVRNNLQTIAALLAMQLRRLDpaSPGA------KALRESAARI 503

lSmAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<
+++A iH+ L++ d++ +s++ + ++e+ ++ +++++++ +
CP001337_3 504 QAIAAIHNLLSRD-DIGVTTVSAVARQVIESVQSTLFESDIRVEFT--I 549

-*

CP001337_3 - -


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 6 0|=
-14 24 0|==
-13 69 23|=*===
-12 212 245|============== *
-11 913 682|==========================================*===============
-10 836 882|===================================================== *
-9 624 745|======================================= *
-8 455 500|============================= *
-7 224 297|============== *
-6 197 165|==========*==
-5 77 89|=====*
-4 44 47|==*
-3 15 24|=*
-2 13 12|*
-1 9 6|*
0 5 3|*
1 2 1|*
2 2 0|=
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 228.6332
P(chi-square) = 7.255e-312

Total sequences searched: 3730

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: