Crenarchaeota Euryarchaeota Nanoarchaeota
Other Archaea
Classification of phyla is from NCBI page
Search:
54 projects found  

1 accessions found for   

Data for CP001338  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001338.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001338_1572 CDS_1706070-1704634 57.8 3.1e-16 1
CP001338_0866 CDS_939233-935430 56.6 7e-16 1
CP001338_0639 CDS_663555-660766 53.1 6.7e-15 1
CP001338_1909 CDS_2128491-2130776 52.7 8.8e-15 1
CP001338_2342 CDS_2596387-2598114 52.1 1.3e-14 1
CP001338_1576 CDS_1711025-1708680 51.9 1.5e-14 1
CP001338_0949 CDS_1024681-1026603 50.7 3.2e-14 1
CP001338_1684 CDS_1852315-1851155 49.8 5.8e-14 1
CP001338_2114 CDS_2368522-2367146 43.2 4.4e-12 1
CP001338_2462 CDS_2713564-2711324 30.7 1.5e-08 1
CP001338_2148 CDS_2398892-2399947 28.9 4.8e-08 1
CP001338_0260 CDS_307660-304907 27.8 1e-07 1
CP001338_1268 CDS_1367938-1369668 27.4 1.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001338_1572 1/1 256 324 .. 1 87 [] 57.8 3.1e-16
CP001338_0866 1/1 1045 1113 .. 1 87 [] 56.6 7e-16
CP001338_0639 1/1 709 777 .. 1 87 [] 53.1 6.7e-15
CP001338_1909 1/1 533 601 .. 1 87 [] 52.7 8.8e-15
CP001338_2342 1/1 346 414 .. 1 87 [] 52.1 1.3e-14
CP001338_1576 1/1 552 620 .. 1 87 [] 51.9 1.5e-14
CP001338_0949 1/1 411 479 .. 1 87 [] 50.7 3.2e-14
CP001338_1684 1/1 142 210 .. 1 87 [] 49.8 5.8e-14
CP001338_2114 1/1 238 302 .. 1 83 [. 43.2 4.4e-12
CP001338_2462 1/1 515 581 .. 1 87 [] 30.7 1.5e-08
CP001338_2148 1/1 285 341 .. 1 87 [] 28.9 4.8e-08
CP001338_0260 1/1 686 752 .. 1 87 [] 27.8 1e-07
CP001338_1268 1/1 367 431 .. 1 87 [] 27.4 1.3e-07

Alignments of top-scoring domains:
CP001338_1572: domain 1 of 1, from 256 to 324: score 57.8, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL +I y+++L +++ +++l+++
CP001338_1 256 DLQRFAYIASHDLQEPLRSIVSYSQMLDRRY------RGKLDADA-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+le i + + r++ Li+d+L +sri a
CP001338_1 295 ----------DEFLEYIVEGGLRMQMLIQDVLAFSRINAS 324

CP001338_0866: domain 1 of 1, from 1045 to 1113: score 56.6, E = 7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL + ++++L++++ + l+++
CP001338_0 1045 ELEQFAYIASHDLKEPLRMVTCFSQILERQYK------GQLDADA-- 1083

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ i + a r+++LindlL +sri +g
CP001338_0 1084 ----------DEFIGYIVDGALRMEALINDLLLYSRINQG 1113

CP001338_0639: domain 1 of 1, from 709 to 777: score 53.1, E = 6.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ + +sH+L PL +I +++lL +++ +++l+ +
CP001338_0 709 ELQRYAYVASHDLQEPLRSIVSFSQLLDRRY------RGKLDKDA-- 747

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++ i + + r+++Li dlL+ srie++
CP001338_0 748 ----------DEYIKFIVDGGVRMQALIKDLLQVSRIETQ 777

CP001338_1909: domain 1 of 1, from 533 to 601: score 52.7, E = 8.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ + +sH+L PL +I ++elL +++ +++l+ +
CP001338_1 533 ELQRYAYVASHDLQEPLRSIVSFSELLNRRY------RGKLDKDA-- 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++ i + + r+++Li dlL+ srie++
CP001338_1 572 ----------DEYIRFIVDGGVRMQNLIKDLLQVSRIETQ 601

CP001338_2342: domain 1 of 1, from 346 to 414: score 52.1, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ sH+L PL I +++lL +++ + l+++
CP001338_2 346 ELQQFAYVTSHDLQEPLRNIVSFSQLLNRRYQ------GRLDADA-- 384

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl i++ ++r++ Li dlL++s+ ++
CP001338_2 385 ----------DEYLGFIIEGGQRMQLLIKDLLQFSQVQTT 414

CP001338_1576: domain 1 of 1, from 552 to 620: score 51.9, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL +I +++lL +++ +++ + +
CP001338_1 552 ELQRFAYIASHDLQAPLRSIVSFSQLLDRRY------RGKFDKDA-- 590

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i + + r+++Li dlL srie++
CP001338_1 591 ----------DDYIRFIVDGGVRMQNLIKDLLLVSRIETQ 620

CP001338_0949: domain 1 of 1, from 411 to 479: score 50.7, E = 3.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL + y++lL++++ ++ l+++
CP001338_0 411 DLQQFAYIASHDLQEPLRMVASYLQLLERKY------RDRLDSDA-- 449

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ + + a+r++++indlL +sr +
CP001338_0 450 ----------QEFIGFAVEGANRMQQQINDLLAYSRVTSR 479

CP001338_1684: domain 1 of 1, from 142 to 210: score 49.8, E = 5.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL +I gy+++Ll+ + d++l+e++
CP001338_1 142 ELEAFSYSVSHDLRAPLRTIDGYTSILLD------LCDEKLGEDE-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++i+ +a+ +++Li +lL lsr+
CP001338_1 181 ----------KGYLSRIQAAAKKMDDLIIELLFLSRLSRT 210

CP001338_2114: domain 1 of 1, from 238 to 302: score 43.2, E = 4.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL +I +++l+ +++ +++l+++
CP001338_2 238 KLQRFAYVASHDLHEPLRSIVSFSQLIDRRY------RGKLDSDV-- 276

peLRledpeyreyletilreaerllrLindlLdlsr<-*
e+l i +++r+++Li dlL+ sr
CP001338_2 277 ----------DEFLGYIAGAGRRMQALILDLLQVSR 302

CP001338_2462: domain 1 of 1, from 515 to 581: score 30.7, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++H++++ L+aI+g++el++++ld ++ + ++r
CP001338_2 515 SIGVLAGGIAHDFNNLLSAILGNIELARMDLD------EDSPLDER- 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + r +L ++lL++++ +a+
CP001338_2 555 -------------MAEMEQVVLRATALTRQLLTFAKGGAP 581

CP001338_2148: domain 1 of 1, from 285 to 341: score 28.9, E = 4.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +a+l +R+PL++I g+a+l +
CP001338_2 285 QNIVQFATLGDHIRNPLAVIVGLADLEEG------------------ 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ ilr+ae ++r+i++ Ld + e++
CP001338_2 314 -----------IYTKQILRQAEEIDRIIDR-LDRGWFESE 341

CP001338_0260: domain 1 of 1, from 686 to 752: score 27.8, E = 1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +++H++++ Lt I g++el+ ++l ++ ++ +++
CP001338_0 686 SLGVLAGGIAHDFNNILTIIVGHLELAGMDL-------ADDDPVTLQ 725

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ r++ r + L +lL++++ +a+
CP001338_0 726 -------------LNKATRALFRARGLTTQLLTFAQGGAP 752

CP001338_1268: domain 1 of 1, from 367 to 431: score 27.4, E = 1.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s l + H++++ +t+ +gya lL++ el+ +q
CP001338_1 367 EMSLYLDIMTHDINNVITSSMGYANLLED----------ELTGPQ-- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++i+ ++++ ++i+++ ++ r+ +
CP001338_1 402 ----------YEFVQKIRTSLDQTIEIIRNVSTIRRLHEK 431


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-16 1 0|=
-15 3 0|=
-14 21 0|===
-13 73 1|*========
-12 169 60|======*============
-11 323 314|==================================*=
-10 504 583|======================================================== *
-9 466 602|==================================================== *
-8 404 451|============================================= *
-7 265 284|============================== *
-6 161 163|==================*
-5 89 89|=========*
-4 46 48|=====*
-3 35 25|==*=
-2 27 13|=*=
-1 13 6|*=
0 5 3|*
1 3 1|*
2 3 0|=
3 3 0|=
4 0 0|
5 3 0|=
6 3 0|=
7 1 0|=
8 4 0|=
9 4 0|=
10 2 0|=
11 2 0|=
12 0 0|
13 1 0|=
14 1 0|=
> 15 20 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 264.9713
P(chi-square) = 0

Total sequences searched: 2655

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: