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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Thioalkalivibrio sp. HL-EbGR7  

Data for CP001339  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001339.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001339_1078 CDS_1182422-1179675 89.6 3.8e-25 1
CP001339_0081 CDS_84564-87164 88.5 7.7e-25 1
CP001339_0123 CDS_135820-133973 87.7 1.3e-24 1
CP001339_2444 CDS_2626684-2625344 83.8 1.7e-23 1
CP001339_0072 CDS_70320-71837 72.9 2.1e-20 1
CP001339_1861 CDS_2011114-2008373 72.5 2.7e-20 1
CP001339_2587 CDS_2759256-2760851 66.2 1.6e-18 1
CP001339_1190 CDS_1300662-1302089 65.4 2.8e-18 1
CP001339_1097 CDS_1203130-1201640 62.1 2.3e-17 1
CP001339_3224 CDS_3411646-3412713 59.7 1.1e-16 1
CP001339_0038 CDS_41182-39215 59.6 1.2e-16 1
CP001339_1126 CDS_1232958-1231360 56.9 7e-16 1
CP001339_2468 CDS_2647564-2646071 55.8 1.4e-15 1
CP001339_0193 CDS_217816-220020 46.2 7.8e-13 1
CP001339_0020 CDS_18988-20445 45.7 1.1e-12 1
CP001339_1011 CDS_1119265-1116305 44.3 2.7e-12 1
CP001339_0303 CDS_350854-352563 42.0 1.2e-11 1
CP001339_1831 CDS_1976425-1974920 41.4 1.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001339_1078 1/1 287 353 .. 1 87 [] 89.6 3.8e-25
CP001339_0081 1/1 204 269 .. 1 87 [] 88.5 7.7e-25
CP001339_0123 1/1 233 299 .. 1 87 [] 87.7 1.3e-24
CP001339_2444 1/1 203 269 .. 1 87 [] 83.8 1.7e-23
CP001339_0072 1/1 282 348 .. 1 87 [] 72.9 2.1e-20
CP001339_1861 1/1 675 743 .. 1 87 [] 72.5 2.7e-20
CP001339_2587 1/1 312 378 .. 1 87 [] 66.2 1.6e-18
CP001339_1190 1/1 252 318 .. 1 87 [] 65.4 2.8e-18
CP001339_1097 1/1 251 319 .. 1 87 [] 62.1 2.3e-17
CP001339_3224 1/1 133 190 .. 1 79 [. 59.7 1.1e-16
CP001339_0038 1/1 433 500 .. 1 87 [] 59.6 1.2e-16
CP001339_1126 1/1 306 374 .. 1 87 [] 56.9 7e-16
CP001339_2468 1/1 256 319 .. 1 82 [. 55.8 1.4e-15
CP001339_0193 1/1 498 570 .. 1 87 [] 46.2 7.8e-13
CP001339_0020 1/1 270 336 .. 1 87 [] 45.7 1.1e-12
CP001339_1011 1/1 761 826 .. 1 87 [] 44.3 2.7e-12
CP001339_0303 1/1 354 420 .. 1 87 [] 42.0 1.2e-11
CP001339_1831 1/1 247 319 .. 1 87 [] 41.4 1.7e-11

Alignments of top-scoring domains:
CP001339_1078: domain 1 of 1, from 287 to 353: score 89.6, E = 3.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks++la++sHELRTPL+aI+gyaelL+ +++l++ +
CP001339_1 287 RKSQLLASISHELRTPLSAIQGYAELLEQ--------YGDLDDRD-- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i +++ l+L+ndlLd +r+e+g
CP001339_1 324 ----------LGWLEIINTSSKDTLKLVNDLLDVARLESG 353

CP001339_0081: domain 1 of 1, from 204 to 269: score 88.5, E = 7.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +flan+sHELRTPL++++g+++lL + t+l++eq
CP001339_0 204 AKPRFLANMSHELRTPLNGVIGMSDLLMD---------TPLNDEQ-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++i+ +a+ ll Li+++Ld+srie+g
CP001339_0 240 ----------RDLGRSIHTSARVLLGLIENILDISRIESG 269

CP001339_0123: domain 1 of 1, from 233 to 299: score 87.7, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHE+RTPLtaI g+aelLl+ + qr
CP001339_0 233 VKSRFLATMSHEIRTPLTAITGFAELLLD---------PRTRVRQR- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++tilr +++l++ +n++Ld+s++ea+
CP001339_0 270 ----------EEAIRTILRNGNHLQQVVNEILDFSKLEAN 299

CP001339_2444: domain 1 of 1, from 203 to 269: score 83.8, E = 1.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+I gy+e+L e ++++++ +
CP001339_2 203 MRRDFVANVSHELRTPLTVIAGYLEALAE---------DAQDDPAL- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ +a r++++i+dlL+lsr+ea
CP001339_2 240 ----------LRTYRSMEGQATRMRQIIEDLLTLSRLEAA 269

CP001339_0072: domain 1 of 1, from 282 to 348: score 72.9, E = 2.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HEL+TPL +I+gy++lL + + +++ +
CP001339_0 282 AMGQLAAGVAHELNTPLGSILGYSQLLID---------SCEDPQRA- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +ti ++++r++r+i +lL ++r e
CP001339_0 319 ----------RHFARTISEQTKRCSRIIHNLLNYARKEKC 348

CP001339_1861: domain 1 of 1, from 675 to 743: score 72.5, E = 2.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++++g+a+ L +++ ++++e++
CP001339_1 675 LRSALLSSVSHDLRSPLSSMIGAADSLARYA-------KDMGPEDQ- 713

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +leti+ e+erl+r i++lLd++r++++
CP001339_1 714 ----------KSLLETIHVEGERLDRYIQNLLDMTRLGQQ 743

CP001339_2587: domain 1 of 1, from 312 to 378: score 66.2, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+R+PL aI+ +a+lL e +++l+ ++
CP001339_2 312 SVGRLTASIAHEIRNPLGAISHAAQLLGE--------SEDLNTPD-- 348

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i+ +++r+++ i+ +L lsr e
CP001339_2 349 ----------KRLAGIIQAQSQRMNAVIQSVLRLSRREDA 378

CP001339_1190: domain 1 of 1, from 252 to 318: score 65.4, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+ a+++HELRTP++ +++ +e++l ++s+e
CP001339_1 252 RLSDYSADIAHELRTPVSNLMTETEVALS---------RTRSAEA-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre l++ l+e er++r+i d+L l+++++g
CP001339_1 288 ---------YREVLHSNLEEFERMSRMIGDMLFLAKADEG 318

CP001339_1097: domain 1 of 1, from 251 to 319: score 62.1, E = 2.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LR PL +I g++++ le++ ++ l++
CP001339_1 251 ELESFAYSVSHDLRAPLRGIDGFSQAVLEDY------SDRLDATG-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++++++++r+ +Li+dlL ls+ +
CP001339_1 290 ----------KDYLNRVRKASQRMGQLIDDLLRLSKVNQA 319

CP001339_3224: domain 1 of 1, from 133 to 190: score 59.7, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++++l+HE+++PL ++rg+a+lL++ el+++ +
CP001339_3 133 ATRALVRGLAHEIKNPLGGLRGAAQLLER----------ELPDKGL- 168

peLRledpeyreyletilreaerllrLindlL<-*
+ey+++i+ ea+rl++L++++L
CP001339_3 169 ----------HEYTRIIIGEADRLQALVDRML 190

CP001339_0038: domain 1 of 1, from 433 to 500: score 59.6, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++a++ HEL++PL+ I+ +a+l+++el ++ ++
CP001339_0 433 SIGEMAAGIGHELNNPLNNILSLAKLIRREL-------PDDDPRA-- 470

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ + +eaer r++n +L ++r +
CP001339_0 471 ----------REDLRALTDEAERATRIVNGILNFARQVPP 500

CP001339_1126: domain 1 of 1, from 306 to 374: score 56.9, E = 7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++sH+LR PL +I+g+a +L e+l + l+++
CP001339_1 306 DLEAFTYSVSHDLRAPLRSIKGFALALHEDLA------GQLNDQA-- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl +i++ a r+++Li+dlL+lsr+
CP001339_1 345 ----------QDYLGRIHQGAVRMNELIDDLLELSRLTRT 374

CP001339_2468: domain 1 of 1, from 256 to 319: score 55.8, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k fl+++sHEL+TPLt Ir a+lL +++ + l+++q
CP001339_2 256 QKVTFLRHISHELKTPLTNIREGADLLSDQV------VGRLNDQQ-- 294

peLRledpeyreyletilreaerllrLindlLdls<-*
+e+ +++++ + +l++Li+dl +s
CP001339_2 295 ----------AEIARIVHDNSLQLQKLIEDLIRFS 319

CP001339_0193: domain 1 of 1, from 498 to 570: score 46.2, E = 7.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l + l+e++++
CP001339_0 498 AWGEVARRLAHEIKNPLTPIQLSAERLQRKLK------PSLPEDEAR 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ti +++e + +++n + +++ a
CP001339_0 539 VL--------ERSTHTIVQQVEAMKSMVNAFSEYAHTPAV 570

CP001339_0020: domain 1 of 1, from 270 to 336: score 45.7, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HEL PL +I g a+ l+ ++++ +
CP001339_0 270 AIGQLAAGVAHELGSPLGVIDGKAQRGLR---------RLMDDDPL- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i+ e+ r+ ++++l+d+ r
CP001339_0 307 ----------KRDLGEIRAEVARMGGIVRQLMDFGRRNPL 336

CP001339_1011: domain 1 of 1, from 761 to 826: score 44.3, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +PLt+I +a+ L ++ +e
CP001339_1 761 SIGRLAAGVAHEIGNPLTGIASLAQNLHY---------EPDESER-- 796

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + il++++r++++++ l ++s ++
CP001339_1 797 ----------ELSAQQILEQTRRINNIVQSLITFSHTGEV 826

CP001339_0303: domain 1 of 1, from 354 to 420: score 42.0, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ + ++H++++PLt+Ir +a+lL+ +++l+ e+
CP001339_0 354 AIGRVAVRVAHDINNPLTVIRNAAHLLKS--------SANLGKED-- 390

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e il+ r+ + +++lL + +
CP001339_0 391 ----------LEDIEMILHHCGRCASTVDNLLRFGKPVRL 420

CP001339_1831: domain 1 of 1, from 247 to 319: score 41.4, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++++++HEL++PL I ++l e+l +++eqr
CP001339_1 247 ALGVLVSGVAHELNNPLGNIASSLDLYNEQL--------RRPPEQR- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eLR ++yl+ +++e++r r+++ lL r +ag
CP001339_1 285 DELRM-----QRYLRQAREETDRAHRIVRLLLNHVRDRAG 319


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 2 0|=
-14 2 0|=
-13 43 2|*====
-12 112 75|=======*====
-11 291 389|============================== *
-10 495 721|================================================== *
-9 587 745|==========================================================*
-8 561 558|=======================================================*=
-7 446 351|===================================*=========
-6 281 202|====================*========
-5 180 111|===========*======
-4 103 59|=====*=====
-3 65 31|===*===
-2 32 16|=*==
-1 21 8|*==
0 12 4|*=
1 12 2|*=
2 5 1|*
3 5 0|=
4 3 0|=
> 5 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 346.9145
P(chi-square) = 0

Total sequences searched: 3283

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: